Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i12
         (101 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   2.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   5.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   5.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   7.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 85  RVIDVDCTHNV 53
           R++DVD  HN+
Sbjct: 77  RILDVDWLHNI 87


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 2   LLYMFFILQYFLYNLFNYIM 61
           +L+M FI+ Y+   LF   M
Sbjct: 372 ILFMLFIILYWPILLFKKAM 391


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -2

Query: 70  DCTHNVVKEVIQEVL*NKK 14
           D  +N++ E+I+  +  K+
Sbjct: 276 DAIYNIISEIIETTIQEKR 294


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 100 RKIAKRVIDV 71
           RKIA R+ID+
Sbjct: 90  RKIAARLIDI 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,115
Number of Sequences: 438
Number of extensions: 251
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2664009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)