Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i08
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.38 
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    29   0.67 
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   4.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    26   8.2  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.2  

>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/84 (22%), Positives = 41/84 (48%)
 Frame = +1

Query: 139 GRGIRYRNLLKIIIPTENANDTPRLKFKLKSPAKLMSPVKLFDVNRSVKNAFPLAYLQLA 318
           G G+   NL  +       +D+ +++F L +   ++ P  L+D NR   +  PL++L  +
Sbjct: 106 GLGVHTHNLFMLACDMAKTSDS-QIRFLLLTDGTIL-PEALYDYNRETVSTCPLSFLSYS 163

Query: 319 LEFVFKLDEV*MRLVMPVQFSWSL 390
                   E+ ++ ++ +QF  +L
Sbjct: 164 TGVERLSKELILKDLLSLQFQQAL 187


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
 Frame = -1

Query: 887 NAMVGTYFVSIMNTIC----LYGPYRTRYYEESQEGHYSGASLLLSWNIVSLPFSCITSF 720
           NA   T F +I+ T+C    L       Y  +S EG       +LSW + S+P S     
Sbjct: 15  NATASTVF-AILGTVCWCVQLIPQIIKNYRAKSTEG--LDTLFILSWVVASIPLSVYNQV 71

Query: 719 ASAAIIYPILADISESLDYIHFSLVLWSSYIYAEQQAIAIMV---FVKNGLNAAIV 561
               I   +  ++ ++L +  F   L+    +  ++A+ +++       GL A ++
Sbjct: 72  QELNIALKVQPELFQALAFTTFFQCLYYGSKWPLRKALFVVISFMLFSGGLQAMLI 127


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -1

Query: 572 AAIVNLYITCIYVMLASGVLRSY---KGFEDWLHYL---TYITHTRYASIFLHRTVFKQP 411
           A I +LY T +YV +++G+++S     G + W        +I  T       +   +K+P
Sbjct: 370 ADIPSLYGTILYVSMSTGIVKSEIGDIGAQQWKTLAPSERWILRTNIRKECTYDIRYKRP 429

Query: 410 TFNILPYSDHENCTG 366
             + L YSD +   G
Sbjct: 430 YVSSLKYSDDDLTAG 444


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = -1

Query: 665 YIHFSLVLWSSYIYAEQQAIAIMVFVKNGLNAAIVNLYITCIYVMLASGVL 513
           Y+ +S  +W S+I A+   +    + +    A    ++  C+  +LA+ V+
Sbjct: 514 YLFYSNFIWISFIVAQFVTLCTQTYDQTSSTANRYLIFYACVDFLLAAEVI 564


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 714 GCNYLPDLGRYFGIAGLHSLLV 649
           GC  +P++  YFG  GLH++LV
Sbjct: 64  GCTGIPNV-YYFGQEGLHNILV 84


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 641 TAPTRSECSPAIPKYRPRSGK*LQPKRTK*YMKMATKLYSKTGVNWRRCNVPPGTLRSTE 820
           + PT S  SP+ P+  P S   L P  ++    +   L S + +  R+  + P  L +T 
Sbjct: 111 SVPTVSIASPSTPELPPSSSPLLPPNGSESSSPIPLSLLSTSSLQQRK--ITPSNLSNTS 168

Query: 821 FYKDRK 838
              D K
Sbjct: 169 KPMDSK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,327
Number of Sequences: 5004
Number of extensions: 67083
Number of successful extensions: 214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)