Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i08
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    33   0.36 
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -1

Query: 593 FVKNGLNAAIVNLYITCIYVMLASGVLRSYKGFEDWLHYLTYITHTRYASIFLHRTVFKQ 414
           F K    A IV+ ++   Y  ++   +  Y  F+ W++Y   +T   Y   F    +F+ 
Sbjct: 603 FGKLSYCAYIVHFFLISWYTNISEAPMHYYSTFQVWIYYAVPVTIIAYIFAFFWSCLFEI 662

Query: 413 PT 408
           PT
Sbjct: 663 PT 664



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
 Frame = -1

Query: 671 LDYIHFSLVLWS------SYIYAEQQAIAIMVFVKNGLNAAIVNLYITCIYVMLASGVLR 510
           LD I F  +LW       S I      + +  F K+  N  ++N +++     L SG++ 
Sbjct: 273 LDCIRFLSMLWVVSGHTVSNIMFPDVLLPVTTFTKHFWNHLLLNAFVSVDTFFLLSGIVV 332

Query: 509 SYKGFEDWLHYLTYITHTRYASIFLHRTVFKQPTFNI 399
           SY  F++ +      +   +   ++HR +   P + I
Sbjct: 333 SYLFFKNRMKSSQIKSPLTWILFYVHRYLRLTPPYMI 369


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/97 (22%), Positives = 46/97 (47%)
 Frame = -1

Query: 710 AIIYPILADISESLDYIHFSLVLWSSYIYAEQQAIAIMVFVKNGLNAAIVNLYITCIYVM 531
           A++Y  L D+S SL  IH+ + ++  + Y EQ  +  +  + + L A I++      Y+ 
Sbjct: 277 ALVY--LGDVSYSLYLIHWPVFVYVKHYYGEQFLVYFLAIIFSTLLAIIMSETYEKWYLS 334

Query: 530 LASGVLRSYKGFEDWLHYLTYITHTRYASIFLHRTVF 420
           +    + S  G   ++  +  + + +  S F+ R  F
Sbjct: 335 IGKFEILSLIGIL-YMLVIAIVVNIKGISTFVERVRF 370


>Z82282-4|CAB05276.1|  485|Caenorhabditis elegans Hypothetical
           protein T07G12.4 protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 533 MLASGVLRSYKGFEDWLHYLTY-ITHTRYA-SIFLHRTVFKQPTFNILP 393
           ++ASG  R  +GFED L  +   +    +A S F ++T+ K P+   LP
Sbjct: 411 IIASGATRKQRGFEDKLEKIEISVEKNGFALSSFANQTILKIPSLTKLP 459


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 533 MLASGVLRSYKGFEDWLHYLTY-ITHTRYA-SIFLHRTVFKQPTFNILP 393
           ++ASG  R  +GFED L  +   +    +A S F ++T+ K P+   LP
Sbjct: 473 IIASGATRKQRGFEDKLEKIEISVEKNGFALSSFANQTILKIPSLTKLP 521


>Z69663-4|CAA93508.1|  287|Caenorhabditis elegans Hypothetical
           protein K02B9.3a protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 756 YSFVAIFMYHFVRFGCN---YLPDLGRYFGIAGLHSLLVGAVVV 634
           + F+A  +Y  V   CN   Y+P L RYF +     + + +VV+
Sbjct: 17  FGFIATLLYLMVAIKCNGIFYVPHLVRYFFLINTLIITINSVVL 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,168
Number of Sequences: 27780
Number of extensions: 374548
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)