Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17i08
(887 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 27 0.23
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 25 1.2
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 1.2
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 25 1.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 25 1.2
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 4.9
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 4.9
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 4.9
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 4.9
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 22 8.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 8.6
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 22 8.6
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 22 8.6
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 22 8.6
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 8.6
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 22 8.6
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 27.1 bits (57), Expect = 0.23
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 677 PKYRPRSGK*LQPKRTK*YMKMATKLYSKTGVNWRR 784
P YRP K KRTK +++ + YSK NWR+
Sbjct: 5 PVYRPTIVK----KRTKKFIRHQSDRYSKLKRNWRK 36
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = -1
Query: 737 SCITSFASAAIIYPILADISESLDYIHFSLVLWSSYIYAEQQ 612
S ++ F + + +++ I + + F+L WS+Y++ E++
Sbjct: 403 SWLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWSTYLFREEE 444
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = -1
Query: 737 SCITSFASAAIIYPILADISESLDYIHFSLVLWSSYIYAEQQ 612
S ++ F + + +++ I + + F+L WS+Y++ E++
Sbjct: 403 SWLSKFPTRSKRIDVISRIFFPIVFAFFNLAYWSTYLFREEE 444
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 557 LYITCIYVMLASGVLRSYKGFEDWLHY 477
++ CI + A GV R Y G D + Y
Sbjct: 459 MFFECIAISWAFGVNRFYDGIRDMIGY 485
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 557 LYITCIYVMLASGVLRSYKGFEDWLHY 477
++ CI + A GV R Y G D + Y
Sbjct: 512 MFFECIAISWAFGVNRFYDGIRDMIGY 538
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 121 NSENKKIFFSNYCID 77
N+ NKK+++ NY I+
Sbjct: 98 NNYNKKLYYKNYIIN 112
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 121 NSENKKIFFSNYCID 77
N+ NKK+++ NY I+
Sbjct: 109 NNYNKKLYYKNYIIN 123
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 121 NSENKKIFFSNYCID 77
N+ NKK+++ NY I+
Sbjct: 339 NNYNKKLYYKNYIIN 353
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.6 bits (46), Expect = 4.9
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -2
Query: 121 NSENKKIFFSNYCID 77
N+ NKK+++ NY I+
Sbjct: 334 NNYNKKLYYKNYIIN 348
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.8 bits (44), Expect = 8.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 540 NASDVQVDNGGVQSVLNEYHDRDRLLFRVNIRRPQHQREVNVVQRFRNIGQDRV 701
N S+ + + + NE + D L R R QH+REV ++Q+ R +R+
Sbjct: 4 NISNYSHHDEKFKQLRNEDNKID-LRSRTKEERLQHRREVWLIQQEREREHERL 56
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,744
Number of Sequences: 438
Number of extensions: 4678
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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