Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i07
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   6.0  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 41  GTRGEALLGIFFVDKLCFL*IIFKYELLVDIILY*LLFSFNKKKFMFKL 187
           G + E  LGI FV+   F   +F YE  V  I +    S   K + F+L
Sbjct: 269 GDKNEESLGILFVEFFRFFGYLFDYEHFVLSIRHGTFLSKRAKGWQFQL 317


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 399 YHQPTEVHRWIRFSPNSLRYHYMHNNILYPPTILINISI 283
           Y  P     + R+ P+S+R+H +    L P +  + I I
Sbjct: 141 YRDPVHDFGFFRYDPSSIRFHDVTEISLSPESAKVGIDI 179


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 75  KKIPSNASPLVPFLNKTRFYF 13
           K+IP+N S +V F  K R++F
Sbjct: 87  KRIPNNDSWVVVFTKKNRYFF 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,266
Number of Sequences: 5004
Number of extensions: 43611
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)