Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i07
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 375 RWIRFSPNSLRYHYMH 328
           +W R +PN    HY+H
Sbjct: 511 QWPRLNPNEKSLHYLH 526


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 375 RWIRFSPNSLRYHYMH 328
           +W R +PN    HY+H
Sbjct: 511 QWPRLNPNEKSLHYLH 526


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 243 KSELDRFIAPEI*IY*YLLKSLEDIRYYYACNGT*DYWGKTLSSG 377
           K+ +  FI P+   +  L++  ED++Y+Y      D W   L+SG
Sbjct: 513 KAAIRIFIGPKYDSHHKLIEIPEDLKYFYEI----DNWMLDLNSG 553


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 243 KSELDRFIAPEI*IY*YLLKSLEDIRYYYACNGT*DYWGKTLSSG 377
           K+ +  FI P+   +  L++  ED++Y+Y      D W   L+SG
Sbjct: 513 KAAIRIFIGPKYDSHHKLIEIPEDLKYFYEI----DNWMLDLNSG 553


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 390 PTEVHRWIRFSPNSLR 343
           P  VHRW +F   S R
Sbjct: 240 PVPVHRWYKFIEGSSR 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 486 IRLPCREI 463
           IRLPCRE+
Sbjct: 387 IRLPCREV 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,994
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)