Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17i04
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 30 0.33
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.8
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.8
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 5.4
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 5.4
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 26 7.1
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 9.4
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 9.4
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 9.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 9.4
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 638 IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPII 531
IQ +ER +EK G+E L + +VL LK P+I
Sbjct: 30 IQTIERFQDEKSGSESVLSQLNRVLMYLKGEEIPLI 65
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 47 ELKFFCTVFVCF-FSIVILRVSLYVVIGYNRL--CVTNFVIFFCNGRNISIF 193
+L F V V F IV+ +LY ++GY L F++F CN SIF
Sbjct: 368 DLTMFLFVIVSGPFQIVLALTNLYHLVGYGALSGAFVTFLLFPCNVVIASIF 419
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 232 SFRFNFDLTSDQIENGNISTVTE 164
+F F+FD+TSD N ++TVT+
Sbjct: 82 AFAFDFDVTSDDSINSALTTVTD 104
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 672 RFLGVYTFGLMFINFTRFL*RCRFA 746
RFLG+ T M + ++L RCRFA
Sbjct: 64 RFLGMETVNKMLDDAIQYLERCRFA 88
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 418 IRAYIKVILSTFLDNFFSSEAILAR*SPKCV 510
++ + ILST ++F+ +AIL+ +P CV
Sbjct: 183 LQPIVHPILSTACNHFYEKDAILSLLNPTCV 213
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 420 DMNHGR*WLPNLASNHTFTTVLRYT*FKFNCFQ*QVKSKYQKYRKNQRQHFLGN 259
++N + W P+ A NH F T ++ + C Q K R R H +GN
Sbjct: 440 ELNPLKRWTPDQAKNHPFITGASFSQY---CIDKQ-KPLLTTQRTRNRSHTIGN 489
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = -1
Query: 716 KIDKHESEGVDPEESLRQFQLELCWCIQQLERTLN-----EK-KGNEKQLQETWKVLTVL 555
+++K E D ++ E C +Q L +L+ EK + +K+++ET L L
Sbjct: 91 EMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEIREKIQSIDKEIEETSSKLESL 150
Query: 554 KNNNQPIIRKRQLMRTHFG-DYRAKMASEEKKL 459
+N I K + +T D+ K S KK+
Sbjct: 151 RNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKM 183
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = -2
Query: 250 QTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNTEEA 77
QT E + + D D E N T N I S++ SKDH T +A
Sbjct: 238 QTAAFEEYDDDDDDDVDDNEQSNSMIETSANADITPKASLLPSTTESSISKDHETSQA 295
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 9.4
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = -1
Query: 752 NKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETW 573
+K STS +K ++ K+ + D E + Q LEL IQQLER NE N+ +E
Sbjct: 408 HKHHSTS-EKLEELSKYVASIQDKERNNGQNALELQARIQQLERR-NEDMYNKLLAEEII 465
Query: 572 K-----VLTVLKNNNQPIIRKRQLMRTHFGDY 492
+ + LK N + R R L+ + +Y
Sbjct: 466 RRKLHNDIQELKGNIRVFCRVRPLLPSEESEY 497
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 208 TSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSK 98
++D N N+S T+E T S I D+++ +SK
Sbjct: 794 SADNSNNTNVSFQTDETQTEDETMSDIHPDDVENHSK 830
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,226
Number of Sequences: 5004
Number of extensions: 56174
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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