Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17i04
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 33 0.34
08_02_0002 + 11173365-11173512,11173528-11178470 31 0.79
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 31 0.79
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 5.6
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 28 7.4
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 7.4
02_05_0039 + 25335690-25335883,25335984-25336131,25337292-253373... 28 7.4
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 28 9.7
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 28 9.7
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737 28 9.7
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150... 28 9.7
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 32.7 bits (71), Expect = 0.34
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -1
Query: 632 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 453
++E +L+ K ++ LQ K+ V P R+L+RT F D A A E K
Sbjct: 39 RIEGSLSFKTREQQSLQVETKIPAVTSPRAAPAPMPRELLRTRFADAAAAAAPESPKHEA 98
Query: 452 NVLRITLIY 426
+ + +Y
Sbjct: 99 AAVTLQKVY 107
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 782 NKMPXPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQL 654
N +P + + +G ++ KP K+D E ++PEE + +++L
Sbjct: 1096 NTVPYISEVRKRGGTSPSPKPDKLDNLEVPNLEPEERINEYEL 1138
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = -1
Query: 773 PXPTRLHNKGKSTSLQKPCKIDKHES--EGVDPEESLRQFQ--LELCWCIQQLERTLNEK 606
P +H+ + L+K ++ E+ E ++ +E L + + +C CIQ + + K
Sbjct: 731 PSMAGIHDVFHVSQLKKCLRVPTEEADPERIEIQEDLTYVEKPVRICECIQGAYKEII-K 789
Query: 605 KGNEKQLQETWKVLTVLK 552
KG + LQ+ WK LK
Sbjct: 790 KGENQNLQQMWKARNDLK 807
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 755 HNKGKSTS--LQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLN-EKKGNEKQL 585
+NKGKS S LQ + K E G + S Q + C Q N +K +K+
Sbjct: 326 NNKGKSISLALQAKVNVQKREGLGSSGKNSGGQKDRDECRTSQPFRSQSNAQKNKQQKKP 385
Query: 584 QETWKVLTVLKNNNQ 540
+ VL+ NNQ
Sbjct: 386 SSSGTSSPVLRQNNQ 400
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 193 ENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNTEEAN 74
E GNI + +++N + NT+S + D+N+Q +K H+T N
Sbjct: 373 EEGNI--MDQQDNSLMNTQSHVHDENLQPPTK-HSTVYKN 409
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 193 ENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNTEEAN 74
E GNI + +++N + NT+S + D+N+Q +K H+T N
Sbjct: 438 EEGNI--MDQQDNSLMNTQSHVHDENLQPPTK-HSTVYKN 474
>02_05_0039 +
25335690-25335883,25335984-25336131,25337292-25337349,
25337652-25338116,25338435-25338575,25338694-25339934
Length = 748
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 196 IENGNISTVTEENNKIGN-TESVIADDNIQGNSKD 95
++NG +S E+NN N TE ++ + G+S+D
Sbjct: 193 VDNGYMSVTNEQNNSTSNGTEIMVVARTMHGSSED 227
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -2
Query: 193 ENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNT 86
E GNI + +++N + NT+S + D+N+Q +K H+T
Sbjct: 461 EEGNI--MDQQDNSLMNTQSHVHDENLQPPTK-HST 493
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 250 QTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGN 104
Q TG++S D ++ ST +NN+ N + DD+ +GN
Sbjct: 323 QPTGNDSHSSTLDPEDEETNEHLNSTHGSQNNRALNAADTVKDDHGKGN 371
>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
Length = 767
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 689 HLRTHVYQFYKVSVKMSICLYCAILL 766
+LR ++ FY +++ S+C YC LL
Sbjct: 108 NLRAALFIFYSLALAHSVCFYCWFLL 133
>02_01_0228 +
1507314-1507566,1507645-1507913,1508010-1508213,
1508323-1508415,1508509-1508604,1508688-1509032,
1509123-1509191,1509284-1509367,1509455-1509520,
1509735-1509800,1509934-1509999,1510097-1510162,
1510280-1510327,1510406-1510468,1510554-1510619,
1510782-1510841,1511185-1511232,1511315-1511605
Length = 750
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -2
Query: 193 ENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNT 86
E GNI + +++N + NT+S + D+N+Q +K H+T
Sbjct: 458 EEGNI--MDQQDNSLMNTQSHVHDENLQPPTK-HST 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,034
Number of Sequences: 37544
Number of extensions: 300051
Number of successful extensions: 776
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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