Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17i04
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    36   0.044
Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical pr...    30   1.6  
CU457740-6|CAM36336.1|  365|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    29   3.8  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U40419-3|AAK67216.3|  260|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical p...    28   6.6  
U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   8.8  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   8.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   8.8  

>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 278 protein.
          Length = 1130

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -1

Query: 638 IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKL 459
           +  LE+ L+ K   EK++Q   K L  +K      IR+   + + F +YR K   +E++L
Sbjct: 337 VTALEKKLHNK---EKEVQTLTKELDQVKTETNDKIRRLTEVTSEFAEYRKKFQQQEEEL 393

Query: 458 SKNVLRITLIYA 423
            +    +T++ A
Sbjct: 394 RRKARLLTVVEA 405


>Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical
           protein F13D12.5 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -2

Query: 247 TTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSK 98
           T  ++S  +N  +T   + NG      +    IG+ ES+  +D  +G +K
Sbjct: 92  TVTEDSLTYNIKITDLHMSNGFEKNSGKREENIGSRESIYREDGARGKAK 141


>CU457740-6|CAM36336.1|  365|Caenorhabditis elegans Hypothetical
           protein C50E10.6 protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 11  IEIKFKLRT*KRELKFFCTVFVCFFSIVILRVSLYVVIGYNRLCVTNFVIFF 166
           + ++F+ +   R  +    VFV  F +++L V+  VVI YN +   N ++ F
Sbjct: 241 LSVRFQAKENLRVFELTVRVFVVGFIMILLAVACIVVITYNLVPSMNTLLIF 292


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -2

Query: 397 VAQFGIKPHIHNSIKVYLI*I*LFSVT-SKIKISEVQEKPKATFFRKSVFQTTGDESFRF 221
           + +F +   +++SI + L    LF    SK +++  +E+P AT+ +K+VF  +G+E+   
Sbjct: 1   MTRFSVTRSLYHSIFIGLCVYILFLFNLSKTRLTP-EERP-ATYMKKNVFYQSGNEATLD 58

Query: 220 NFDLTSDQIENG-NISTVTEENNK 152
           N       +EN  N  +V E + K
Sbjct: 59  NCPWPISNVENVINRVSVLENSGK 82


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 294 YRKNQRQHF---LGNLYFKLQEMSRSVLISI*LQIK*KMEIFLPLQ 166
           YRKN  +H     GN+    QE  RS ++ + +Q      IF+PL+
Sbjct: 213 YRKNTLKHIKNQAGNMSIACQEQYRSFILGLTIQCILPCVIFIPLE 258


>U40419-3|AAK67216.3|  260|Caenorhabditis elegans Hypothetical
           protein C27F2.9 protein.
          Length = 260

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
 Frame = -1

Query: 719 CKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQ 540
           C I++H+++ +  +E L+++       I  ++    +K   + ++  TW+   V  N+  
Sbjct: 37  CNIERHDAQELTQKEFLKRYAYSEPVIIYNIDNDEFQKLTEKAEMLSTWRDADVTLNSAN 96

Query: 539 PIIRKRQLMRTHFGDY-RAKMASEEKKLSKN 450
                R  + T FG+Y   KM  +  ++  N
Sbjct: 97  TYSYTR--VPTTFGNYIEEKMKPQNLEMLGN 125


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 117 TYRETLRITILKKQTKTVQKNLSSLFQVLNLN 22
           T    L++  + K TKT+ +NL  LFQ   LN
Sbjct: 269 TIHSKLKVVDMSKNTKTMHRNLLGLFQSSILN 300


>U29380-10|AAO38582.1|  454|Caenorhabditis elegans Hypothetical
           protein ZK546.14b protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = -1

Query: 761 RLHNKGKSTSLQK----PCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNE 594
           RL  K K   +++    P K+    +E +  E+ L++ + +L    +  +R   EKKG E
Sbjct: 222 RLQKKLKEMKVERKGKGPAKVTSAMAEKMAEEKRLKRRESKL----KLKQRRAEEKKGKE 277

Query: 593 KQLQETWKVLTVLKNNNQPIIRKR 522
              Q   + +   +N N+P+ +++
Sbjct: 278 AAAQVKKETVESTENGNEPVEKQK 301


>U29380-9|AAA68745.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK546.14a protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = -1

Query: 761 RLHNKGKSTSLQK----PCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNE 594
           RL  K K   +++    P K+    +E +  E+ L++ + +L    +  +R   EKKG E
Sbjct: 240 RLQKKLKEMKVERKGKGPAKVTSAMAEKMAEEKRLKRRESKL----KLKQRRAEEKKGKE 295

Query: 593 KQLQETWKVLTVLKNNNQPIIRKR 522
              Q   + +   +N N+P+ +++
Sbjct: 296 AAAQVKKETVESTENGNEPVEKQK 319


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 587 IVFRFLSFHLKFALTVGYTNITRAETVVTIP 679
           ++ R LSFHLK  + V   NIT + ++ ++P
Sbjct: 869 VISRNLSFHLKLEIDVFQRNITISTSLFSVP 899


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = -1

Query: 722 PCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNN 543
           P K+ KH S+     + L+  + E+  C+QQ       +K + +  +E  ++L    NNN
Sbjct: 54  PKKLAKHISKSRQFFD-LKSRESEIRRCVQQAAAQFERQKTSVEMAREQVQILHNSLNNN 112

Query: 542 QPIIRKRQ 519
           Q +  ++Q
Sbjct: 113 QELDAEKQ 120


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 761 RLHNKGKST--SLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQ 588
           RL  K +S   S ++P K+ +  S   D   S RQF   +   +QQ     +   G+E +
Sbjct: 231 RLRRKSRSPRRSREEPRKMSRSRSRSADKASSSRQFDSHIPRHLQQQRSRHDSSSGSESE 290


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 761 RLHNKGKST--SLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQ 588
           RL  K +S   S ++P K+ +  S   D   S RQF   +   +QQ     +   G+E +
Sbjct: 231 RLRRKSRSPRRSREEPRKMSRSRSRSADKASSSRQFDSHIPRHLQQQRSRHDSSSGSESE 290


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = -1

Query: 638  IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEE 468
            +Q L R    K+ N+K+  +TW V+   +N++     +   +   F D +  + + +
Sbjct: 3506 LQLLSRQFKSKRKNKKKRTKTWSVIGCDENDDSTKCMQHNKLLEEFRDLKKSLITRQ 3562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,108
Number of Sequences: 27780
Number of extensions: 316282
Number of successful extensions: 1040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)