Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17h24
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 393 e-110
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 390 e-109
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 174 1e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 101 1e-22
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 44 2e-05
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 37 0.004
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.10
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 32 0.10
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.18
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.24
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.31
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.31
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.55
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.96
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.9
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 8.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.9
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 8.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 393 bits (967), Expect = e-110
Identities = 175/220 (79%), Positives = 197/220 (89%)
Frame = -3
Query: 724 LSAPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 545
+ PTY NLNRLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA
Sbjct: 223 IERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSA 282
Query: 544 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++
Sbjct: 283 AKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSR 342
Query: 364 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 185
RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 343 RTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLM 402
Query: 184 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 65
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 403 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Score = 29.5 bits (63), Expect = 0.55
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = -2
Query: 752 YDXCRRNXDIERP 714
YD CRRN DIERP
Sbjct: 214 YDICRRNLDIERP 226
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 390 bits (959), Expect = e-109
Identities = 174/220 (79%), Positives = 196/220 (89%)
Frame = -3
Query: 724 LSAPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 545
+ P+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA
Sbjct: 219 IERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSA 278
Query: 544 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK K
Sbjct: 279 AKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAK 338
Query: 364 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 185
RTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLM
Sbjct: 339 RTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLM 398
Query: 184 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 65
Y+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 399 YSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Score = 29.9 bits (64), Expect = 0.41
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 752 YDXCRRNXDIERPN 711
YD CRRN DIERP+
Sbjct: 210 YDICRRNLDIERPS 223
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 174 bits (423), Expect = 1e-44
Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 3/223 (1%)
Frame = -3
Query: 724 LSAPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA 545
+ +P+Y +LN L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ +
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 544 EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK 365
+ + +SV E+T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 364 RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM 185
+ FV+W P + PP DL + + + N+T+I E + RL +F M
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAM 388
Query: 184 YAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 65
+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 101 bits (241), Expect = 1e-22
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 7/219 (3%)
Frame = -3
Query: 715 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---A 545
PT+ N+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 544 EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKT 368
E + +V ++ P NQMV +P + +++ + +G+ P DV+ ++ I+
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRE 342
Query: 367 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 188
+R F+ W P +V ++ + P + ++ + ML+N T+IA + R ++D
Sbjct: 343 RRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDR 397
Query: 187 MYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 80
+ + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 398 LRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 44.4 bits (100), Expect = 2e-05
Identities = 55/207 (26%), Positives = 82/207 (39%), Gaps = 4/207 (1%)
Frame = -1
Query: 627 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMA 448
+S S+ +T + P STS S + NS PLP + T ++ +IP
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS-----TSIPPTG 295
Query: 447 STWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVST-TSHPPWCPEATWP 271
++ V TV + + P P+ S SS+ + S S +T TS PP T
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355
Query: 270 RFNVP---SACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWL 100
VP ++ TPPP T+SS + S SCT TS + +S PV +
Sbjct: 356 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTTPVTPTV 413
Query: 99 PSKRITKKSAWTPLKARVREPKSTKPV 19
P + T P ++ PV
Sbjct: 414 PPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 33.5 bits (73), Expect = 0.034
Identities = 48/163 (29%), Positives = 65/163 (39%), Gaps = 15/163 (9%)
Frame = -1
Query: 594 TPVSTSHWSRTRQSSLPRRPTMNSFPLPRSQTHASS----PPTRW*NAIPVMASTWLAVC 427
TP+ T S T +S +S PLP + T ++ PPT +++ + +
Sbjct: 85 TPIITESTSSTSSASTTGS---SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 141
Query: 426 CTVVTSYPRM*TRPSLP---SKP----SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPR 268
T TS P T S S P S +ST + P S S ++ P P T P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLST--PITP--TVPP 197
Query: 267 FNVPSACCPTPPPSLKL----GLALTTSSTSCTPSVLSCTGTS 151
+ S P PP S L T+STSCT S TG S
Sbjct: 198 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGS 240
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 36.7 bits (81), Expect = 0.004
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 9/205 (4%)
Frame = -1
Query: 618 SSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNSFPLPRSQTHASSPPTRW*NAIPVMAS 445
+S ++ + ++ H QS P P +++ PLP S PP +P + S
Sbjct: 110 ASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHN-PLPVSCQPVLRPPP-----VPQVPS 163
Query: 444 TWLAVCCTVVTSYPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEA 280
W YP P+LP SKP V+ N V P +R + P+
Sbjct: 164 HW----------YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPT 212
Query: 279 TWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP--KPVRT 106
++P P+ CP+ PP L A+ SS S ++ + T + + P +
Sbjct: 213 SYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAV 272
Query: 105 WLPSKRITKKSAWTPLKARVREPKS 31
WLP + T + P A V +P S
Sbjct: 273 WLPMTQPT----FQPPSANVYQPAS 293
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 258 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 85
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 84 TKKSAWTPLKARVREPKSTK 25
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.9 bits (69), Expect = 0.10
Identities = 36/139 (25%), Positives = 56/139 (40%)
Frame = -1
Query: 537 PTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVL 358
PT S P PR T S+ R PV+ + A + + P+ SKP+ +
Sbjct: 964 PTSKSKPFPRLATGGSTAAAR--GPRPVVQNKPAAT---------KPVSMPAAKSKPAPM 1012
Query: 357 SNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTP 178
+N PVS + T + PP A R N A P + + A T S++ P
Sbjct: 1013 AN------PVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAP 1064
Query: 177 SVLSCTGTSVRVWRRESSP 121
S ++ +S + S+P
Sbjct: 1065 STVTSAASSPSNISKPSAP 1083
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 366 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 187
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 186 CTP--SVLSCTGTS 151
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 30.3 bits (65), Expect = 0.31
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 2/151 (1%)
Frame = -1
Query: 594 TPVSTSH--WSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCT 421
TP+++S+ + T S+ N+ L S T +S+P + + AS+
Sbjct: 253 TPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVN 312
Query: 420 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCP 241
T+ T S S + + +ST P+S STT+ T ++
Sbjct: 313 STTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 372
Query: 240 TPPPSLKLGLALTTSSTSCTPSVLSCTGTSV 148
TP S+ A + SST T S S T TSV
Sbjct: 373 TPLTSVNSTSATSASSTPLT-SANSTTSTSV 402
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 420 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 286
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Frame = -1
Query: 549 LPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMA---STWLAVCCTVVTSYPRM*TRPSL 379
+P P++ P+ S P R A+PV+ S VV P + RP++
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQR--PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655
Query: 378 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 286
P P S PV V + PP P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 25.4 bits (53), Expect = 8.9
Identities = 23/90 (25%), Positives = 32/90 (35%)
Frame = -1
Query: 552 SLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSLPS 373
S+P+RP + P S P +P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 372 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 283
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.31
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 366 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 190
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 189 SCTPSVLS 166
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.31
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 366 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 190
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 189 SCTPSVLS 166
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.55
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 378 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 214
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -1
Query: 384 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 208
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 207 LTTSSTSCTP 178
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -1
Query: 315 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 229
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.96
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = -1
Query: 414 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 244
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 243 PTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 112
P P P+ + ++S P + + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 621 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTR 475
P+++ P S + T +SS+P P N+ P P S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 508 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 383
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.3
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Frame = -1
Query: 558 QSSLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMASTWLAVCCTVVTSYPRM*TRPSL 379
++ L R P+ + PL H S PP IP + +T ++ P + RPSL
Sbjct: 350 RAPLQRTPSGSLTPLSSRPAHTSLPP------IPTVQTT--------SSNVPPV-NRPSL 394
Query: 378 PSK-PSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTP-PPSLKLGLAL 205
SK PSV + S + P+S S + P++ P SA TP PSL+
Sbjct: 395 KSKSPSVSNILSNQLSPIS-SANNDVMARLQPKSPIPATKSYSATIQTPRSPSLR----- 448
Query: 204 TTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS 94
STS V TSV+ + +S V + PS
Sbjct: 449 RADSTSHIIKVPHLPDTSVKTAKTGASEIDVLSRYPS 485
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 380 SDGRVHILGYDVTTVQHTASHVLAMTGIAFHHLVGGLEACVCDLGNGKLFMVGLLGRDDW 559
S G +LGY ++ A++V+A + + HL+ G D K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 560 RVRDQWEVDTGVR 598
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 375 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 229
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 324 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 166
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.9
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Frame = -1
Query: 621 PSSRLTWCLTPV--STSHWSRTRQSSLPRRPTMNSFPLPRSQTHASSPPTRW*NAIPVMA 448
P+S +T TPV S+S S S T S S T +SSP + IP
Sbjct: 246 PTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSV 305
Query: 447 STWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPR 268
+ ++ + +SY +L + + ++ + TG + S + TS PP+ ++
Sbjct: 306 PSSVSSFTSSSSSYTT-----TLTASNTSVTYTGTG----TGSATFTSSPPFYSNSSVIP 356
Query: 267 FNVPSACCPTPPPSLKLGLALTTSSTSCT 181
+VPS+ + LT S+TS T
Sbjct: 357 TSVPSSVSSFTSSNSSYTTTLTASNTSIT 385
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 384 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 298
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 8.9
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -1
Query: 417 VTSYPRM*TRPSLP--SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 244
+T+ R T+P+ P S+ +N + S S+ S P +A +VP +
Sbjct: 498 LTNKARNATQPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGA 557
Query: 243 PTPPPSLKLGLALTTSSTSCTPSVLSCTGT 154
S LA SS S +L C GT
Sbjct: 558 RNTAASRPTNLAAGNSSASIVQQLLECGGT 587
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 387 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 292
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 587 TGVRHQVSLELGEVHIQSAVESQRSSDRGDNLSNETIQVGVG 712
TG+ ++ E I+S+ E ++S+D + SN+ +GVG
Sbjct: 340 TGIIYEAVTEASAPKIKSSAEKKKSADPEADRSNDD-SIGVG 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,062
Number of Sequences: 5004
Number of extensions: 77784
Number of successful extensions: 340
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -