Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h23
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    27   2.3  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    27   2.3  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    27   2.3  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   5.3  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   7.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   9.2  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 687 VQTQLDGLEESFQPLD-GLPAQLTDFNTKISEIQSI----LTGDTAPDPP 553
           V T++  +E   + LD GLP     FN K   ++ I    + GD+  DPP
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPP 332


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 687 VQTQLDGLEESFQPLD-GLPAQLTDFNTKISEIQSI----LTGDTAPDPP 553
           V T++  +E   + LD GLP     FN K   ++ I    + GD+  DPP
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPP 332


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = -1

Query: 687 VQTQLDGLEESFQPLD-GLPAQLTDFNTKISEIQSI----LTGDTAPDPP 553
           V T++  +E   + LD GLP     FN K   ++ I    + GD+  DPP
Sbjct: 283 VTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPP 332


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 768 LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLDGLEESFQPLDGLPAQLTDFNT 607
           LF I++K N+          I   + K   + +Q + L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 732 RILDAIAETNTKVD-SVQTQLDGLEESFQPLDGLPAQLTDFNTKISEIQS 586
           RI + I  T   +  SVQ+ +D +   FQPL  L  QL +    +  + S
Sbjct: 270 RIKNLITTTEDSLQQSVQSNIDFVNSGFQPLYDLTIQLKEELQSLKRLSS 319


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 320 CGFTNVYHFPEYSKLVYYSKAIKN--FEMHNE 231
           CG+ ++Y F     +V++ + IKN  F+++++
Sbjct: 312 CGYAHLYSFSSVKSVVHWLQIIKNCTFQLYDD 343


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 672 DGLEESFQPLDGLPAQLTDFNTKISEIQSILTGDTA 565
           D  +   Q L+G  +++ D    +SE+ +   GDT+
Sbjct: 23  DNFDAEMQDLNGYISEIVDEARNVSEVDAKFLGDTS 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,946
Number of Sequences: 5004
Number of extensions: 52981
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)