Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h23
         (780 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein.      33   0.87 
BC046159-1|AAH46159.1|  272|Homo sapiens Similar to PTPRF intera...    33   0.87 
BC022873-1|AAH22873.1|  292|Homo sapiens Unknown (protein for IM...    33   0.87 
AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein.         33   0.87 
AB033056-1|BAA86544.2|  932|Homo sapiens KIAA1230 protein protein.     33   0.87 

>BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein.
          Length = 1011

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -1

Query: 759 IMSKPNVLTRILDAIAE-TNTKVDSVQTQLDGL--EESFQPLDGLPAQLTDFNTKISEIQ 589
           ++S+ ++ T+ LD +AE +N K+     + D L  E+ F+  +GL  ++ D   K+SE+ 
Sbjct: 159 LLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD 218

Query: 588 S 586
           S
Sbjct: 219 S 219


>BC046159-1|AAH46159.1|  272|Homo sapiens Similar to PTPRF
           interacting protein, binding protein 1 (liprin beta 1)
           protein.
          Length = 272

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -1

Query: 759 IMSKPNVLTRILDAIAE-TNTKVDSVQTQLDGL--EESFQPLDGLPAQLTDFNTKISEIQ 589
           ++S+ ++ T+ LD +AE +N K+     + D L  E+ F+  +GL  ++ D   K+SE+ 
Sbjct: 152 LLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD 211

Query: 588 S 586
           S
Sbjct: 212 S 212


>BC022873-1|AAH22873.1|  292|Homo sapiens Unknown (protein for
           IMAGE:4102924) protein.
          Length = 292

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -1

Query: 759 IMSKPNVLTRILDAIAE-TNTKVDSVQTQLDGL--EESFQPLDGLPAQLTDFNTKISEIQ 589
           ++S+ ++ T+ LD +AE +N K+     + D L  E+ F+  +GL  ++ D   K+SE+ 
Sbjct: 159 LLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD 218

Query: 588 S 586
           S
Sbjct: 219 S 219


>AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein.
          Length = 1005

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -1

Query: 759 IMSKPNVLTRILDAIAE-TNTKVDSVQTQLDGL--EESFQPLDGLPAQLTDFNTKISEIQ 589
           ++S+ ++ T+ LD +AE +N K+     + D L  E+ F+  +GL  ++ D   K+SE+ 
Sbjct: 159 LLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD 218

Query: 588 S 586
           S
Sbjct: 219 S 219


>AB033056-1|BAA86544.2|  932|Homo sapiens KIAA1230 protein protein.
          Length = 932

 Score = 33.5 bits (73), Expect = 0.87
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = -1

Query: 759 IMSKPNVLTRILDAIAE-TNTKVDSVQTQLDGL--EESFQPLDGLPAQLTDFNTKISEIQ 589
           ++S+ ++ T+ LD +AE +N K+     + D L  E+ F+  +GL  ++ D   K+SE+ 
Sbjct: 80  LLSRTSLETQKLDLMAEISNLKLKLTAVEKDRLDYEDKFRDTEGLIQEINDLRLKVSEMD 139

Query: 588 S 586
           S
Sbjct: 140 S 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,461,287
Number of Sequences: 237096
Number of extensions: 1782724
Number of successful extensions: 2691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2691
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)