Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h23
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    30   2.1  
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   6.5  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   6.5  

>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
            protein Y39G10AR.3 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = -1

Query: 732  RILDAIAETNTKVDSVQTQLDGLEESFQPLDGLPAQLTDFNTKISEIQSILTGDTAPDPP 553
            +I+DA A+ N+ +  ++     ++E     +G   Q++D  +K+ E+Q+  +     +PP
Sbjct: 912  KIMDATAKQNSLLREIEDLKSKIKEQDTTFEGHRNQMSDLESKLQELQAKQSFLRKSEPP 971


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 296 FPEYSKLVYYSKAIKNFE-MHNEMIIYYDLK 207
           F E   + Y S+ I   E MHN  ++Y DLK
Sbjct: 290 FTEQEMIFYASEVILGLEHMHNRFVVYRDLK 320


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 427 TAAQSRFLRDLQLTIIANCVKKLNCIIKIPCYIVPNAGLPTFIIFLNTLNLC 272
           TA  +  ++D++    ANC K      +   Y  PN   P       TL+ C
Sbjct: 145 TATPAAVVQDMKTAAAANCPKTCGLCCQTDAYYCPNVAYPRLNCASITLSQC 196


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 777  NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLDGLEESFQPLDGLPAQLTD 616
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,566,936
Number of Sequences: 27780
Number of extensions: 299813
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)