Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h22
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   3.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   4.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.6  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   5.6  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   7.5  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 348 GHFFIRVESATRVIEKETLSVSTGGLIDNK 259
           GH F +V SA+ + EK +++   GGL   K
Sbjct: 700 GHSFAKVSSASGLTEKTSITEQLGGLTQVK 729


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 439 TNKSRLRSVTPPFFLVLDVA*IISNIPTKIRTFLY 335
           T K RLR V PP FL L     + N   K +T L+
Sbjct: 268 TLKKRLRGVLPPSFLTLQEKKKLENRGVKKKTSLH 302


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 580 RNWTKWGSFKDSPRSPLPKAVW 515
           RNWT++  F +S ++P    VW
Sbjct: 585 RNWTEYVHFPNSGKTPTEVGVW 606


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 614 HFLGCSSVSLYRKNPKLGSKVYG 682
           HF+GCS ++ Y    KLG   +G
Sbjct: 26  HFVGCSHLTDYHLMEKLGEGTFG 48


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  PTSPEWSLVIVRSLSNFNLAANGG 161
           P +  WS   +R L  FN+ ANGG
Sbjct: 62  PNANIWSNQAIRILMAFNILANGG 85


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 799 QKLLKKNPKNRVFTA-QSGVRLPISI 725
           Q ++KKNP N +F A    V+L +SI
Sbjct: 73  QTIVKKNPDNLIFVAVNQNVQLQLSI 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,340
Number of Sequences: 5004
Number of extensions: 71808
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)