Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h18
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    30   0.47 
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.8  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.8  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 119 QVAQERRVALDSAAFTRHDYRCADCIVGFNHKSKLLNHMKKH 244
           ++AQ    +  +++     YRC +C+ GF+  S L  H   H
Sbjct: 449 KIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSH 490


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 433 CALTN-FYVCPCKCKIVDFNACFIAYL 510
           C+L+N  +  PC+C ++   +C I+Y+
Sbjct: 26  CSLSNDSWRRPCRCSLIAHESCLISYI 52


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 388 PAASSTWSIKGYHDSPSLQFNVKERKK 308
           PAASST + +  H SPS     +E  K
Sbjct: 277 PAASSTMATESSHQSPSADSQAEELSK 303


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/82 (26%), Positives = 31/82 (37%)
 Frame = -3

Query: 720 GRYHRPAYFCREAVMRFGLKGGAAVLTIMRP*NLYLKVGRWVAHLRCRCLWAPVTT*HQV 541
           G Y  P        M FG+   AAV   M   +   +    VA LR R  W+      ++
Sbjct: 396 GMYLSPTLAHEVVYMYFGIAMRAAVANGMHKKSANAQFSGDVAELRKRLFWSVYCMERKI 455

Query: 540 GCELVHPSKQQISNKTSIKIHY 475
           G  L  P       ++ I IH+
Sbjct: 456 GISLGRPESLV---RSEIDIHF 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,123
Number of Sequences: 5004
Number of extensions: 64208
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)