Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h18
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330...    31   1.5  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    29   6.1  
09_02_0548 - 10467342-10468810,10470309-10471632                       28   8.1  

>03_05_1104 +
           30431833-30432143,30432789-30432862,30432949-30433067,
           30434462-30434526,30434962-30435310
          Length = 305

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 160 RGAVQGHSPLLRHLRTRTSHVSTRQNPQRQHW 65
           R   +G SP  R   +RTS  S+R+ P R+HW
Sbjct: 117 RKEFRGISPHRRARASRTSTASSRRTPPRKHW 148


>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 349  HDILLLTTWMKLLVIYKWYVRW*YNICRCALTNFYVCPCKCKIVDFNA----CFIAYLLL 516
            H +LL +T  KLL I + Y++W   + R       +   +  IVDFN     CFI  L +
Sbjct: 1310 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSI 1369

Query: 517  R 519
            R
Sbjct: 1370 R 1370


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 687 HGRNKQGGGTYPCELTRRPATSNTD 761
           H RNK  G  YPCEL    A   TD
Sbjct: 896 HERNKYAGVAYPCELPWPRALQATD 920


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,939,685
Number of Sequences: 37544
Number of extensions: 485705
Number of successful extensions: 1093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)