Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h18
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M63449-1|AAA29050.1| 1060|Drosophila melanogaster zinc-finger ho...    34   0.28 
BT011080-1|AAR82746.1| 1025|Drosophila melanogaster SD01785p pro...    34   0.28 
BT003277-1|AAO25034.1|  747|Drosophila melanogaster LD10638p pro...    34   0.28 
AY118654-1|AAM50023.1|  569|Drosophila melanogaster SD06902p pro...    34   0.28 
AE014297-4662|AAF57084.1|  747|Drosophila melanogaster CG1322-PA...    34   0.28 
AE014297-4661|AAN14258.2|  859|Drosophila melanogaster CG1322-PC...    34   0.28 
AE014297-4660|AAF57083.1| 1054|Drosophila melanogaster CG1322-PB...    34   0.28 
AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    31   1.5  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    31   1.5  
BT028849-1|ABI34230.2|  382|Drosophila melanogaster RT01123p pro...    31   2.6  
BT028817-1|ABI34198.2|  382|Drosophila melanogaster RT01023p pro...    31   2.6  
BT023706-1|AAY85106.1|  541|Drosophila melanogaster IP01347p pro...    31   2.6  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      31   2.6  
AE014296-3542|AAF51728.1|  382|Drosophila melanogaster CG7204-PA...    31   2.6  
BT022164-1|AAY51558.1|  541|Drosophila melanogaster IP01345p pro...    30   4.5  
AF212313-1|AAF32281.1|  541|Drosophila melanogaster senseless pr...    30   4.5  
AF212312-1|AAF32280.1|  541|Drosophila melanogaster senseless pr...    30   4.5  
AE014296-2268|AAN11834.1|  541|Drosophila melanogaster CG32120-P...    30   4.5  
BT011481-1|AAR99139.1|  572|Drosophila melanogaster RE04973p pro...    29   7.9  
AY060612-1|AAL28160.1|  321|Drosophila melanogaster GH03873p pro...    29   7.9  
AY051994-1|AAK93418.1|  736|Drosophila melanogaster LD46233p pro...    29   7.9  
AY051687-1|AAK93111.1|  571|Drosophila melanogaster LD23630p pro...    29   7.9  
AE014298-2619|AAN09596.1|  301|Drosophila melanogaster CG15814-P...    29   7.9  
AE014298-2618|AAN09595.1|  321|Drosophila melanogaster CG15814-P...    29   7.9  
AE014298-2617|AAN09594.1|  321|Drosophila melanogaster CG15814-P...    29   7.9  
AE014298-2616|AAF48770.1|  321|Drosophila melanogaster CG15814-P...    29   7.9  
AE014297-2019|AAN13657.1|  593|Drosophila melanogaster CG31392-P...    29   7.9  
AE014297-1031|AAF54444.3|  552|Drosophila melanogaster CG8478-PA...    29   7.9  
AE014297-1030|AAN13444.2|  571|Drosophila melanogaster CG8478-PB...    29   7.9  
AE014134-1945|AAF53004.2|  736|Drosophila melanogaster CG12299-P...    29   7.9  

>M63449-1|AAA29050.1| 1060|Drosophila melanogaster zinc-finger
           homeodomain protein 1 protein.
          Length = 1060

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 614 VAEERQTPVEEHAPVEHSADLRCSRCSKQFNHPTELVQHEK 654


>BT011080-1|AAR82746.1| 1025|Drosophila melanogaster SD01785p
           protein.
          Length = 1025

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 579 VAEERQTPVEEHAPVEHSADLRCSRCSKQFNHPTELVQHEK 619


>BT003277-1|AAO25034.1|  747|Drosophila melanogaster LD10638p
           protein.
          Length = 747

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 301 VAEERQTPVEEHAPVEHAADLRCSRCSKQFNHPTELVQHEK 341


>AY118654-1|AAM50023.1|  569|Drosophila melanogaster SD06902p
           protein.
          Length = 569

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 123 VAEERQTPVEEHAPVEHSADLRCSRCSKQFNHPTELVQHEK 163


>AE014297-4662|AAF57084.1|  747|Drosophila melanogaster CG1322-PA,
           isoform A protein.
          Length = 747

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 301 VAEERQTPVEEHAPVEHAADLRCSRCSKQFNHPTELVQHEK 341


>AE014297-4661|AAN14258.2|  859|Drosophila melanogaster CG1322-PC,
           isoform C protein.
          Length = 859

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 413 VAEERQTPVEEHAPVEHAADLRCSRCSKQFNHPTELVQHEK 453


>AE014297-4660|AAF57083.1| 1054|Drosophila melanogaster CG1322-PB,
           isoform B protein.
          Length = 1054

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 122 VAQERRVALDSAAFTRH--DYRCADCIVGFNHKSKLLNHMK 238
           VA+ER+  ++  A   H  D RC+ C   FNH ++L+ H K
Sbjct: 608 VAEERQTPVEEHAPVEHAADLRCSRCSKQFNHPTELVQHEK 648


>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQ 268
           ++C  C   F HK  L+ HM+ HD     R+
Sbjct: 587 HKCPSCPREFTHKGNLMRHMETHDDSANARE 617


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQ 268
           ++C  C   F HK  L+ HM+ HD     R+
Sbjct: 587 HKCPSCPREFTHKGNLMRHMETHDDSANARE 617


>BT028849-1|ABI34230.2|  382|Drosophila melanogaster RT01123p
           protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 167 RHDYRCADCIVGFNHKSKLLNHMKKHDPVRGTRQI 271
           R  ++C+ C   F+ KS LL H++ H    GT ++
Sbjct: 348 RKPFKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM 382


>BT028817-1|ABI34198.2|  382|Drosophila melanogaster RT01023p
           protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 167 RHDYRCADCIVGFNHKSKLLNHMKKHDPVRGTRQI 271
           R  ++C+ C   F+ KS LL H++ H    GT ++
Sbjct: 348 RKPFKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM 382


>BT023706-1|AAY85106.1|  541|Drosophila melanogaster IP01347p
           protein.
          Length = 541

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           ++C  C+  F+ +S L+ HM+KH
Sbjct: 469 HKCTVCLKAFSQRSNLITHMRKH 491


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQ 268
           ++C  C   F HK  L+ HM+ HD     R+
Sbjct: 587 HKCPSCPREFTHKGYLMRHMETHDDSANARE 617


>AE014296-3542|AAF51728.1|  382|Drosophila melanogaster CG7204-PA
           protein.
          Length = 382

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 167 RHDYRCADCIVGFNHKSKLLNHMKKHDPVRGTRQI 271
           R  ++C+ C   F+ KS LL H++ H    GT ++
Sbjct: 348 RKPFKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM 382


>BT022164-1|AAY51558.1|  541|Drosophila melanogaster IP01345p
           protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           ++C  C+  F+  S L+ HM+KH
Sbjct: 469 HKCTVCLKAFSQSSNLITHMRKH 491


>AF212313-1|AAF32281.1|  541|Drosophila melanogaster senseless
           protein protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           ++C  C+  F+  S L+ HM+KH
Sbjct: 469 HKCTVCLKAFSQSSNLITHMRKH 491


>AF212312-1|AAF32280.1|  541|Drosophila melanogaster senseless
           protein protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           ++C  C+  F+  S L+ HM+KH
Sbjct: 469 HKCTVCLKAFSQSSNLITHMRKH 491


>AE014296-2268|AAN11834.1|  541|Drosophila melanogaster CG32120-PA
           protein.
          Length = 541

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           ++C  C+  F+  S L+ HM+KH
Sbjct: 469 HKCTVCLKAFSQSSNLITHMRKH 491


>BT011481-1|AAR99139.1|  572|Drosophila melanogaster RE04973p
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPV 253
           + C +C   F  KS L  HM+ HDPV
Sbjct: 373 FSCKNCSTTFRVKSLLDVHMRMHDPV 398


>AY060612-1|AAL28160.1|  321|Drosophila melanogaster GH03873p
           protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 321 KRGRNQHIFTSATLVWMI*RVPLTGSCFFMWLSSLDLWL 205
           KR    + F +   +W+I   PL  SC F WL  + +WL
Sbjct: 68  KRHYRSYAFVTLLAMWLI---PLIISCSFGWLRFIIIWL 103


>AY051994-1|AAK93418.1|  736|Drosophila melanogaster LD46233p
           protein.
          Length = 736

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           Y+CA C   F   S+L+ HMK H
Sbjct: 395 YQCAICREAFRASSELVQHMKNH 417


>AY051687-1|AAK93111.1|  571|Drosophila melanogaster LD23630p
           protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPV 253
           + C +C   F  KS L  HM+ HDPV
Sbjct: 372 FSCKNCSTTFRVKSLLDVHMRMHDPV 397


>AE014298-2619|AAN09596.1|  301|Drosophila melanogaster CG15814-PD,
           isoform D protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 321 KRGRNQHIFTSATLVWMI*RVPLTGSCFFMWLSSLDLWL 205
           KR    + F +   +W+I   PL  SC F WL  + +WL
Sbjct: 48  KRHYRSYAFVTLLAMWLI---PLIISCSFGWLRFIIIWL 83


>AE014298-2618|AAN09595.1|  321|Drosophila melanogaster CG15814-PC,
           isoform C protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 321 KRGRNQHIFTSATLVWMI*RVPLTGSCFFMWLSSLDLWL 205
           KR    + F +   +W+I   PL  SC F WL  + +WL
Sbjct: 68  KRHYRSYAFVTLLAMWLI---PLIISCSFGWLRFIIIWL 103


>AE014298-2617|AAN09594.1|  321|Drosophila melanogaster CG15814-PB,
           isoform B protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 321 KRGRNQHIFTSATLVWMI*RVPLTGSCFFMWLSSLDLWL 205
           KR    + F +   +W+I   PL  SC F WL  + +WL
Sbjct: 68  KRHYRSYAFVTLLAMWLI---PLIISCSFGWLRFIIIWL 103


>AE014298-2616|AAF48770.1|  321|Drosophila melanogaster CG15814-PA,
           isoform A protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 321 KRGRNQHIFTSATLVWMI*RVPLTGSCFFMWLSSLDLWL 205
           KR    + F +   +W+I   PL  SC F WL  + +WL
Sbjct: 68  KRHYRSYAFVTLLAMWLI---PLIISCSFGWLRFIIIWL 103


>AE014297-2019|AAN13657.1|  593|Drosophila melanogaster CG31392-PA
           protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 164 TRHDYRCADCIVGFNHKSKLLNHMKKHDP 250
           T   YRC  C +  N K  +L H++   P
Sbjct: 229 TAERYRCIQCDITINRKDNMLRHLRSMHP 257


>AE014297-1031|AAF54444.3|  552|Drosophila melanogaster CG8478-PA,
           isoform A protein.
          Length = 552

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPV 253
           + C +C   F  KS L  HM+ HDPV
Sbjct: 353 FSCKNCSTTFRVKSLLDVHMRMHDPV 378


>AE014297-1030|AAN13444.2|  571|Drosophila melanogaster CG8478-PB,
           isoform B protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPV 253
           + C +C   F  KS L  HM+ HDPV
Sbjct: 372 FSCKNCSTTFRVKSLLDVHMRMHDPV 397


>AE014134-1945|AAF53004.2|  736|Drosophila melanogaster CG12299-PA
           protein.
          Length = 736

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           Y+CA C   F   S+L+ HMK H
Sbjct: 395 YQCAICREAFRASSELVQHMKNH 417


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,396,009
Number of Sequences: 53049
Number of extensions: 796870
Number of successful extensions: 2916
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)