Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h18
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z71181-5|CAA94898.1|  355|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    28   9.5  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    28   9.5  
AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical...    28   9.5  
AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal che...    28   9.5  
AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal che...    28   9.5  

>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHD 247
           Y C  C   F  K +L+ HMK+HD
Sbjct: 440 YSCKHCPEKFKWKKQLMKHMKEHD 463


>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 439 LTNFYVCPCKCKIVDFNACFIAYLLLRW--VDELTAYLVLSGYR 564
           +T +Y+CP     +DF + F+A  +  +  VD L ++ V+  YR
Sbjct: 260 ITIYYLCPMLDMDLDFASVFVASTITLYPAVDPLPSFFVIKSYR 303


>U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical
           protein B0403.3 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 472 YIYMDTHKNLSAHIYICYITILHTICILPAASSTWSIKGYHDS 344
           ++  + H N+ A   +C+  I+  +CI  A ++   +K Y+DS
Sbjct: 167 FVEQNKHCNVIACYQLCHEYIISKVCIDSAVAARSVVKSYYDS 209


>AF101305-8|AAF98599.1|  534|Caenorhabditis elegans Hypothetical
           protein C04F5.9 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 173 DYRCADCIVGFNHKSKLLNHMKKH 244
           D+RC  C++ F   SKL  H++ H
Sbjct: 4   DHRCPQCLLEFPFASKLQRHLETH 27


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 167 RHD----YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQIIHTNVADVK 298
           RHD    YRC  C    N    L +H+K+H        I++ ++AD+K
Sbjct: 730 RHDIEQLYRCVQCTYTTNRPVSLKDHLKQH-------AIVNMSIADIK 770


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 167 RHD----YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQIIHTNVADVK 298
           RHD    YRC  C    N    L +H+K+H        I++ ++AD+K
Sbjct: 730 RHDIEQLYRCVQCTYTTNRPVSLKDHLKQH-------AIVNMSIADIK 770


>U40959-2|AAA81766.1|  413|Caenorhabditis elegans Hypothetical
           protein B0310.2 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDP 250
           + C  C   FN K  LL H K H P
Sbjct: 336 HTCPHCHKKFNRKDNLLRHKKTHSP 360


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 DYRCADCIVGFNHKSKLLNHMKKH 244
           D++C  C + F  KS L  HM+ H
Sbjct: 891 DFKCPTCSMSFRVKSTLTTHMQTH 914


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 367 SIKGYHDSPSLQFNVKERKKPTHLHICNISMDDLTCASHRVVLLHVVEQL 218
           +I G +D  S    ++E+K    LHI   ++  LT      +L+HV+ Q+
Sbjct: 318 TIMGQNDMISKILEIREKKAKFWLHITGQAIAALTFREPNNILVHVLSQV 367


>AL032644-6|CAA21671.1|  574|Caenorhabditis elegans Hypothetical
           protein Y51H1A.6 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHM-KKHDPVRGTRQI 271
           ++CA+C  GF    +L +HM K+HD     R++
Sbjct: 259 FKCAECGDGFPVMDRLCDHMIKQHDCQTNVREV 291


>Z71181-5|CAA94898.1|  355|Caenorhabditis elegans Hypothetical
           protein K07C5.5 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +2

Query: 161 FTRHDYRCADCIVGFNHKSKLLNHMKKH----DPVRGTRQIIHTNVADVKMCWFLPLFHV 328
           F  H Y   +C+  +NHK   L +++ H     P  G   ++     +    W   L H 
Sbjct: 40  FVEHVYPEPECLKNWNHKFVQLKNIRMHYVEEGPADGDVLLMVHGFPEFWYSWRFQLEHF 99

Query: 329 ELKRRTVMISFY*PRG*SCW*YTNGM*DGNITYV--DVR 439
           +   R + I     RG +     +G+ D N+T++  D+R
Sbjct: 100 KHTHRCIAIDM---RGYNTTDRPSGISDYNLTHLVEDIR 135


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 107 SPCPQVAQERRVALDS--AAFTRHDYRCADCIVGFNHKSKLLNHMKKH 244
           +P P    +RR+ + +  A F+     C  C   F  K+ L +H+KKH
Sbjct: 248 TPLPDRYFQRRLTITAFQAGFSSECVSCMYCNFVFRQKALLESHIKKH 295


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 170 HDYRCADCIVGFNHKSKLLNHMKKHDPVRGTR 265
           H + C+ C++G+   ++  NH+K+ + VR  R
Sbjct: 101 HAFVCSLCVMGWTANARFPNHIKRLNEVRVLR 132


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 170 HDYRCADCIVGFNHKSKLLNHMKKHDPVRGTR 265
           H + C+ C++G+   ++  NH+K+ + VR  R
Sbjct: 101 HAFVCSLCVMGWTANARFPNHIKRLNEVRVLR 132


>AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical
           protein Y54G2A.20 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKHDPVRGTRQIIHTNVADVKMCWF 310
           Y C DC   ++ K+ +LNH ++  P       I T     K  WF
Sbjct: 59  YACNDCNGKYSSKASVLNHYRRAHPDTSDPSKI-TLYPTAKQAWF 102


>AC006625-13|ABI18147.1|  273|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform b protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
 Frame = +2

Query: 95  GDVTSPCPQVAQERRVALDSAAFTRH--------DYRCADCIVGFNHKSKLLNHMKKH 244
           G+   PC   AQ  +   DS+  T+H         Y C+ C++ F     L  HMK H
Sbjct: 218 GERPYPC---AQCEKAFTDSSTLTKHLRTHTGHKPYVCSICMMKFTQSGNLHRHMKTH 272


>AC006625-12|AAK68272.2|  214|Caenorhabditis elegans Abnormal
           chemotaxis protein 1,isoform a protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
 Frame = +2

Query: 95  GDVTSPCPQVAQERRVALDSAAFTRH--------DYRCADCIVGFNHKSKLLNHMKKH 244
           G+   PC   AQ  +   DS+  T+H         Y C+ C++ F     L  HMK H
Sbjct: 159 GERPYPC---AQCEKAFTDSSTLTKHLRTHTGHKPYVCSICMMKFTQSGNLHRHMKTH 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,038
Number of Sequences: 27780
Number of extensions: 381137
Number of successful extensions: 1122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)