Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h18
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.28 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           Y+C  C   F H  KL  HM+ H
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIH 170



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 176 YRCADCIVGFNHKSKLLNHMKKH 244
           Y+C  C   F+ K+   +H++ H
Sbjct: 62  YQCLLCQKAFDQKNLYQSHLRSH 84


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 FTRHDYRCADCIVGFNHKSKLLNHMKKHDPV 253
           F    ++C  C     +KS L +H+K H  V
Sbjct: 12  FGSKPFKCEKCSYSCVNKSMLNSHLKSHSNV 42



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 170 HDYRCADCIVGFNHKSKLLNHMKKH 244
           + YRCA+C     +   L  H++K+
Sbjct: 43  YQYRCANCTYATKYCHSLKLHLRKY 67


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 RCADCIVGFNHKSKLLNHMK 238
           R A CI+G ++   ++NH K
Sbjct: 473 RAAKCIIGKDYSLPMVNHSK 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,210
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)