Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h16
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1409 + 26359581-26360561                                         28   5.8  
03_06_0717 + 35702592-35703152,35703789-35704121                       28   5.8  

>07_03_1409 + 26359581-26360561
          Length = 326

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 114 LTQQMRPLAQNLKQGED*ILPXMAPQPCCIDXRQFCKT 1
           L+Q   P+   ++  E   LP M PQP  +D  + C T
Sbjct: 217 LSQTTMPITVTMEGSEPLRLPVMPPQPAVLDADKSCLT 254


>03_06_0717 + 35702592-35703152,35703789-35704121
          Length = 297

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 68  SPCFRFWARGRICCVSHFDVCIICCVRYFNV 160
           S C R W RGR+   SHF      C+R  +V
Sbjct: 114 SECKRGWLRGRVTHSSHFWASTSACLRRSHV 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,530,418
Number of Sequences: 37544
Number of extensions: 203438
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)