Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17h14
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 200 3e-52
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.089
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.089
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.089
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 29 1.9
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 29 1.9
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 1.9
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 27 5.8
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 27 5.8
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 27 5.8
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 200 bits (489), Expect = 3e-52
Identities = 97/155 (62%), Positives = 116/155 (74%), Gaps = 2/155 (1%)
Frame = -3
Query: 462 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 283
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 282 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 103
TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 102 AAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPI 4
+AG+ V LKR P P+ AH + + +P LLAP+
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPL 155
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.089
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 278 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 415
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.089
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 278 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 415
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.089
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 278 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 415
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 84 NLKRQPAPPKAAHIVSGTE 28
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 328 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 197
WC S T + + +++ ++ C C Q C + YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = -2
Query: 328 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 197
WC S T + + +++ ++ C C Q C + YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 105
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 186 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 10
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 9 PI 4
P+
Sbjct: 419 PV 420
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 19 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 105
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 124 LILFDSLKEVLSALGVL 174
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 124 LILFDSLKEVLSALGVL 174
LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 229 LVDNHTESVSSNVVHATCLSMVY 297
+ D H +++SSN H CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 229 LVDNHTESVSSNVVHATCLSMVY 297
+ D H +++SSN H CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 229 LVDNHTESVSSNVVHATCLSMVY 297
+ D H +++SSN H CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,649
Number of Sequences: 27780
Number of extensions: 235918
Number of successful extensions: 951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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