Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h05
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...   100   5e-22
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    31   0.19 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    29   0.79 
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    28   1.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   4.2  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    27   4.2  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    26   7.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   7.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   7.3  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    26   7.3  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   7.3  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 3/192 (1%)
 Frame = -3

Query: 746 IAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRAYKTL--LPASASDVYYRDTNGN 573
           + + E +  E+  AKLK  F R  +   +   P S    + +  LP ++ DVYY D  GN
Sbjct: 231 LEVSERVVFENHAAKLKSNFDRAKWYMGNFYNPVSTAINRVVYSLPRNSKDVYYTDEVGN 290

Query: 572 ISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHI 393
           I+TS+M+V+     ++L PRYP+FGGW   + L + +P YE    S N        +   
Sbjct: 291 ITTSHMRVEPHQTWIELNPRYPVFGGWNYLFQLDWKMP-YEEFRSSKNRREYLDIPLAWS 349

Query: 392 FDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVEN 213
             DM  ++ V   + PEG+T I++ +P  ++    +    +LDT GR V ++   N+ + 
Sbjct: 350 PGDMIYEKAVWSYVFPEGATNIEIEMPVEISNSNVTKIHKFLDTLGRQVFTYEALNVTDG 409

Query: 212 HIQDF-QIRYTF 180
              D   I Y +
Sbjct: 410 VPSDIVHISYEY 421


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 200 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLD 90
           F   +TFP  L++ EP+L+V   YT F+  I+Y  L+
Sbjct: 291 FHKYFTFPLRLLIFEPILLVVSTYTAFVYGILYGLLE 327


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
 Frame = -3

Query: 593 YRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSYEYLYHSGNEYLLK 414
           + DTN        KVK    +++L P  P       H  LG +V +Y      GN+  + 
Sbjct: 169 FNDTNLERILKVAKVKPAVHQMELHPFLPQTEFVEKHKKLGIHVTAYSPF---GNQNTIY 225

Query: 413 MRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTR----LPDSLHFTYLDTKGRPV 246
              I  + +   + ++       EG TG  + + +++TR    +P S++   + +  +  
Sbjct: 226 ESKIPKLIEHETIQKIAKS--KGEGVTGATIAVSWAITRGTSVIPKSVNEQRIKSNFK-Y 282

Query: 245 ISFIKKNIVENHIQDFQIRYTFPRLLMLQEPL 150
           I   K+++ E  I    IR  F +     EP+
Sbjct: 283 IPLTKEDMDE--INSIGIRARFNQATFSNEPV 312


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 491 RTHYTLG--YNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIK 324
           R HY      N+   + LYH      L++  + H F+D  VD +  +I L + STG+K
Sbjct: 283 RAHYGKAGSENIAVIKQLYHE-----LQIPELYHKFEDDMVDSISKEIDLIDESTGLK 335


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 682 GMTINKIITVVLLVYV-PTRPSFQLPHQTYTIEIRMVTSPHPI 557
           G  +  IIT ++ V V    P     H T+TI++   T PH I
Sbjct: 200 GQPVLPIITDLIKVSVLDVEPKHNRIHSTFTIQVEYGTGPHAI 242


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -2

Query: 213 PYPRFSNPLY----IPTSADVAGTTFSCWL 136
           P P  S+PLY    IPT  D+  T  S WL
Sbjct: 277 PMPLISHPLYSSSWIPTLHDLVSTRCSVWL 306


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 737 EEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRAYKTLLPASASDVYYRDTNGNISTS 561
           E+V++ +   ++     S Y   +D HS P   R    L P+S    Y R T G   TS
Sbjct: 339 EDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPSSRFYEYTRPTYGRTDTS 397


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 764 VSHWGNIAIEEVIEIEHT 711
           V+H GN++++E+IE+  T
Sbjct: 98  VAHSGNVSLDEIIEVART 115


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 425  YLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPV 246
            Y ++  +  H+    Q +E   + +    S   KL    ++ R P S   + LDT  R  
Sbjct: 1557 YTIESNTTAHLL--CQFEEACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRNC 1614

Query: 245  ISFI-KKNIVENHIQD 201
            I F  K+N+ E+ I +
Sbjct: 1615 IKFSHKQNLEEDFIHE 1630


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 287  SLHFTYLDTKGRPVISFIKKN 225
            S+ F  +D  G PVI F+K+N
Sbjct: 1511 SVDFQSVDCHGNPVIEFLKRN 1531


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = -3

Query: 446 LYHSGNEYLLKMR---SIDHIFDDMQ-VDELV-TKIILPEGSTGIKLNIPYSVTRLPDSL 282
           LY +  E L+  R   S D++   +  VD+L+ TKI++  G T      P + + L D L
Sbjct: 356 LYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMAFSMLADML 415

Query: 281 HFTYLDTKGRPVISFI 234
           H+  ++   + +   I
Sbjct: 416 HYVRMELSPQQIYKVI 431


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 764 VSHWGNIAIEEVIEIEHT 711
           V+H GN++++E+IE+  T
Sbjct: 98  VAHSGNVSLDEIIEVART 115


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 11  LTRCVKSGNNMFHYKFNLYVQTCELKN 91
           L    K+G N F+YKF+ Y++    +N
Sbjct: 224 LALLAKNGGNEFYYKFSQYIKRMLQRN 250


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 611 KLEGGSCRHV-H*QDHCDDLVDSH 679
           +L+  S RH  H  DH DD VDSH
Sbjct: 332 RLKNLSQRHTNHSTDHHDDTVDSH 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,613,268
Number of Sequences: 5004
Number of extensions: 81150
Number of successful extensions: 225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)