Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h05
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...   205   3e-53
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296...    30   2.5  
04_04_1518 - 34129542-34130001,34130567-34130652                       29   4.4  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    29   4.4  
06_03_1230 + 28575661-28575728,28575791-28575861,28575978-285761...    29   5.8  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score =  205 bits (501), Expect = 3e-53
 Identities = 95/248 (38%), Positives = 155/248 (62%), Gaps = 1/248 (0%)
 Frame = -3

Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQ-QDHHSGPASVR 636
           NN+PF     V R IE+SHWGN+ I E   I H GAKLKG FSR DYQ + +  G +S R
Sbjct: 220 NNNPFAVAKEVIREIEISHWGNVQITEHYNIAHGGAKLKGEFSRIDYQSRPYIRGVSSFR 279

Query: 635 AYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPS 456
                LP  A  +YYRD  GNISTS++       +L++ PR+PLFGGW+T +T+GY +P 
Sbjct: 280 HLIARLPPRAHSIYYRDEIGNISTSHLWSDSKKTQLEVEPRFPLFGGWQTTFTIGYGLPL 339

Query: 455 YEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHF 276
            +++++S  +  L + +     +++ +++L+ K++LPEGS  I +++P+  T+    + +
Sbjct: 340 QDFVFNSDGKRFLNI-TFGSPVEEILIEKLIVKVVLPEGSKDIDISVPFP-TKQEQEVKY 397

Query: 275 TYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVR 96
           ++LD  GRPV+   K +++  H   FQ+ Y F  + +L+EP++++   + LF+  I+Y+R
Sbjct: 398 SHLDISGRPVVVLEKLDVIPEHNLYFQVYYRFNNISLLREPMMLITGFFLLFMACIVYMR 457

Query: 95  LDFSIHKS 72
            D SI K+
Sbjct: 458 TDMSISKN 465


>06_01_0416 +
           2965761-2965809,2965995-2966172,2966256-2966327,
           2966849-2967137,2967941-2968081,2969011-2969115,
           2969354-2969501,2970023-2970075,2970189-2970266,
           2970361-2970480,2970779-2970943,2971663-2971797,
           2972063-2972182
          Length = 550

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 606 CGSWKEGLVGTYTSRTTVMILLIVIPRKRTFEL 704
           C  WK  L G   + T  +I+L +  R+RTF+L
Sbjct: 478 CSPWKVVLFGLGVTITIALIILALTTRRRTFKL 510


>04_04_1518 - 34129542-34130001,34130567-34130652
          Length = 181

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 646 LVYVPTRPSFQLPHQTYTIEIRMVTSPHP 560
           LV +PTRP  ++PH+   +     TSP P
Sbjct: 120 LVSIPTRPPCRIPHRGQGLPPASTTSPSP 148


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
 Frame = -3

Query: 611 SASDVYYRDTNGNISTSNMKVKKDSVELDLR--PRYPLFGGWR------THY------TL 474
           +A  +YY  +  ++S  +  VK  ++ LD     +   FG  R      TH       T 
Sbjct: 427 AAGALYYLHSAASVSVLHRDVKSSNILLDSNYTAKVSDFGASRLIPNDQTHVFTNIQGTF 486

Query: 473 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 294
           GY  P Y   YH+G+   L  +S  + F  + ++ L+ K  + +  TG K N+       
Sbjct: 487 GYLDPEY---YHTGH---LNEKSDVYSFGVVLLELLLRKQPIFDDGTGTKKNL------- 533

Query: 293 PDSLHFTYLDTKGRPVISFIKKNIVENHIQD 201
             S++F   + KG+P+   +   +++  I+D
Sbjct: 534 --SIYFLS-EIKGKPITEIVAPEVIKEAIED 561


>06_03_1230 +
           28575661-28575728,28575791-28575861,28575978-28576188,
           28576339-28576495
          Length = 168

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 207 PRFSNPLYIPTSADVAGTTFSCWLLI 130
           PRF   +YI   AD+    F CWL I
Sbjct: 13  PRFEITIYILCFADIEDEDFQCWLNI 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,124,870
Number of Sequences: 37544
Number of extensions: 468857
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)