Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17h05
(814 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 360 3e-99
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 360 3e-99
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 360 3e-99
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 360 3e-99
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 360 3e-99
M75110-1|AAA35987.1| 291|Homo sapiens H,K-ATPase beta subunit p... 32 2.8
BX537316-1|CAM28358.1| 291|Homo sapiens ATPase, H+/K+ exchangin... 32 2.8
BC029059-1|AAH29059.1| 291|Homo sapiens ATPase, H+/K+ exchangin... 32 2.8
BC126230-1|AAI26231.1| 62|Homo sapiens C21orf94 protein protein. 30 8.7
BC126226-1|AAI26227.1| 62|Homo sapiens C21orf94 protein protein. 30 8.7
AF427489-1|AAM53528.1| 62|Homo sapiens C21orf94 protein protein. 30 8.7
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 360 bits (886), Expect = 3e-99
Identities = 157/246 (63%), Positives = 201/246 (81%)
Frame = -3
Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R+
Sbjct: 220 NNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS 279
Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
+KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PSY
Sbjct: 280 FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSY 339
Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+T
Sbjct: 340 EYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYT 399
Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
YLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVRL
Sbjct: 400 YLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRL 459
Query: 92 DFSIHK 75
DFSI K
Sbjct: 460 DFSITK 465
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 360 bits (886), Expect = 3e-99
Identities = 157/246 (63%), Positives = 201/246 (81%)
Frame = -3
Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R+
Sbjct: 220 NNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS 279
Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
+KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PSY
Sbjct: 280 FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSY 339
Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+T
Sbjct: 340 EYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYT 399
Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
YLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVRL
Sbjct: 400 YLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRL 459
Query: 92 DFSIHK 75
DFSI K
Sbjct: 460 DFSITK 465
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 360 bits (886), Expect = 3e-99
Identities = 157/246 (63%), Positives = 201/246 (81%)
Frame = -3
Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R+
Sbjct: 220 NNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS 279
Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
+KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PSY
Sbjct: 280 FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSY 339
Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+T
Sbjct: 340 EYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYT 399
Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
YLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVRL
Sbjct: 400 YLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRL 459
Query: 92 DFSIHK 75
DFSI K
Sbjct: 460 DFSITK 465
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 360 bits (886), Expect = 3e-99
Identities = 157/246 (63%), Positives = 201/246 (81%)
Frame = -3
Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R+
Sbjct: 181 NNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS 240
Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
+KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PSY
Sbjct: 241 FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSY 300
Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+T
Sbjct: 301 EYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYT 360
Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
YLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVRL
Sbjct: 361 YLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRL 420
Query: 92 DFSIHK 75
DFSI K
Sbjct: 421 DFSITK 426
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 360 bits (886), Expect = 3e-99
Identities = 157/246 (63%), Positives = 201/246 (81%)
Frame = -3
Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R+
Sbjct: 220 NNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS 279
Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
+KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PSY
Sbjct: 280 FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSY 339
Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+T
Sbjct: 340 EYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYT 399
Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
YLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVRL
Sbjct: 400 YLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRL 459
Query: 92 DFSIHK 75
DFSI K
Sbjct: 460 DFSITK 465
>M75110-1|AAA35987.1| 291|Homo sapiens H,K-ATPase beta subunit
protein.
Length = 291
Score = 31.9 bits (69), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 234 KEKHCGEPYPRFSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFF 85
++K CG+ F + P + + G T S W+ I + +V +Y+ F
Sbjct: 6 EKKTCGQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGLF 55
>BX537316-1|CAM28358.1| 291|Homo sapiens ATPase, H+/K+ exchanging,
beta polypeptide protein.
Length = 291
Score = 31.9 bits (69), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 234 KEKHCGEPYPRFSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFF 85
++K CG+ F + P + + G T S W+ I + +V +Y+ F
Sbjct: 6 EKKTCGQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGLF 55
>BC029059-1|AAH29059.1| 291|Homo sapiens ATPase, H+/K+ exchanging,
beta polypeptide protein.
Length = 291
Score = 31.9 bits (69), Expect = 2.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -2
Query: 234 KEKHCGEPYPRFSNPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFF 85
++K CG+ F + P + + G T S W+ I + +V +Y+ F
Sbjct: 6 EKKTCGQRMEEFQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGLF 55
>BC126230-1|AAI26231.1| 62|Homo sapiens C21orf94 protein protein.
Length = 62
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -1
Query: 229 KTLWRTIS----KIFKSVIHSHVC*CCRNHF*LLASY--IHCFCVLLF 104
KT+W+ ++ + S+ H+C C R H L+ Y ++ FC L F
Sbjct: 15 KTVWKEVAWPHCHVPLSLKKGHICLCARQHIHLVCVYTLVYVFCYLTF 62
>BC126226-1|AAI26227.1| 62|Homo sapiens C21orf94 protein protein.
Length = 62
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -1
Query: 229 KTLWRTIS----KIFKSVIHSHVC*CCRNHF*LLASY--IHCFCVLLF 104
KT+W+ ++ + S+ H+C C R H L+ Y ++ FC L F
Sbjct: 15 KTVWKEVAWPHCHVPLSLKKGHICLCARQHIHLVCVYTLVYVFCYLTF 62
>AF427489-1|AAM53528.1| 62|Homo sapiens C21orf94 protein protein.
Length = 62
Score = 30.3 bits (65), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -1
Query: 229 KTLWRTIS----KIFKSVIHSHVC*CCRNHF*LLASY--IHCFCVLLF 104
KT+W+ ++ + S+ H+C C R H L+ Y ++ FC L F
Sbjct: 15 KTVWKEVAWPHCHVPLSLKKGHICLCARQHIHLVCVYTLVYVFCYLTF 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,902,866
Number of Sequences: 237096
Number of extensions: 2800082
Number of successful extensions: 8789
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8785
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -