Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17h05
         (814 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p pro...   361   e-100
AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-P...   361   e-100
BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p pro...   358   6e-99
AY069605-1|AAL39750.1|  384|Drosophila melanogaster LD36528p pro...    29   5.7  
AE013599-1612|AAF58441.1|  384|Drosophila melanogaster CG3850-PA...    29   5.7  
BT025851-1|ABF85751.1|  571|Drosophila melanogaster IP14996p pro...    29   7.6  
AE014298-1097|AAS65276.1|  557|Drosophila melanogaster CG15332-P...    29   7.6  
AE014298-1096|AAF46303.1|  571|Drosophila melanogaster CG15332-P...    29   7.6  

>BT001395-1|AAN71150.1|  371|Drosophila melanogaster GH05770p
           protein.
          Length = 371

 Score =  361 bits (888), Expect = e-100
 Identities = 158/251 (62%), Positives = 205/251 (81%)
 Frame = -3

Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
           N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG FSRYD+Q++  SG A++++
Sbjct: 121 NSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKGSFSRYDFQKEGRSGLAALKS 180

Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
           YKT LPASAS VYYRDTNGNISTSNM   +D +EL+LRPR+PLFGGW+T YTLGYNVPSY
Sbjct: 181 YKTYLPASASGVYYRDTNGNISTSNMNAVRDFIELELRPRFPLFGGWKTQYTLGYNVPSY 240

Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
           EY+++ GN+Y LKM  IDHI+D+M +DE   KIILPEGS+ I+L+ PYS++RLP+ L  T
Sbjct: 241 EYMFNDGNKYQLKMHLIDHIYDNMAIDEATIKIILPEGSSDIRLSTPYSISRLPNELVHT 300

Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
           YLDT GRPV+SF K N+VE+HI DF + Y+F +  MLQEPLLV GF+Y +FL  I+++RL
Sbjct: 301 YLDTIGRPVVSFSKSNLVESHISDFTLHYSFSKTSMLQEPLLVSGFIYIIFLFTIVFLRL 360

Query: 92  DFSIHKSEHKD 60
           DFSI    HK+
Sbjct: 361 DFSITSHAHKE 371


>AE014134-1857|AAS64675.1|  458|Drosophila melanogaster CG33303-PA
           protein.
          Length = 458

 Score =  361 bits (888), Expect = e-100
 Identities = 158/251 (62%), Positives = 205/251 (81%)
 Frame = -3

Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
           N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG FSRYD+Q++  SG A++++
Sbjct: 208 NSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKGSFSRYDFQKEGRSGLAALKS 267

Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
           YKT LPASAS VYYRDTNGNISTSNM   +D +EL+LRPR+PLFGGW+T YTLGYNVPSY
Sbjct: 268 YKTYLPASASGVYYRDTNGNISTSNMNAVRDFIELELRPRFPLFGGWKTQYTLGYNVPSY 327

Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
           EY+++ GN+Y LKM  IDHI+D+M +DE   KIILPEGS+ I+L+ PYS++RLP+ L  T
Sbjct: 328 EYMFNDGNKYQLKMHLIDHIYDNMAIDEATIKIILPEGSSDIRLSTPYSISRLPNELVHT 387

Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
           YLDT GRPV+SF K N+VE+HI DF + Y+F +  MLQEPLLV GF+Y +FL  I+++RL
Sbjct: 388 YLDTIGRPVVSFSKSNLVESHISDFTLHYSFSKTSMLQEPLLVSGFIYIIFLFTIVFLRL 447

Query: 92  DFSIHKSEHKD 60
           DFSI    HK+
Sbjct: 448 DFSITSHAHKE 458


>BT011096-1|AAR82762.1|  464|Drosophila melanogaster RE30726p
           protein.
          Length = 464

 Score =  358 bits (880), Expect = 6e-99
 Identities = 157/251 (62%), Positives = 204/251 (81%)
 Frame = -3

Query: 812 NNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVRA 633
           N++PF+TV  +ER +E+SHWGNIA++E I++ HTGAKLKG FSRYD+Q++  SG A++++
Sbjct: 214 NSAPFVTVNTLERTLEISHWGNIAVQESIQMTHTGAKLKGSFSRYDFQKEGRSGLAALKS 273

Query: 632 YKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPSY 453
           YKT LPASAS VYYRDTNGNISTSNM   +D +EL+LRPR+ LFGGW+T YTLGYNVPSY
Sbjct: 274 YKTYLPASASGVYYRDTNGNISTSNMNAVRDFIELELRPRFTLFGGWKTQYTLGYNVPSY 333

Query: 452 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 273
           EY+++ GN+Y LKM  IDHI+D+M +DE   KIILPEGS+ I+L+ PYS++RLP+ L  T
Sbjct: 334 EYMFNDGNKYQLKMHLIDHIYDNMAIDEATIKIILPEGSSDIRLSTPYSISRLPNELVHT 393

Query: 272 YLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRL 93
           YLDT GRPV+SF K N+VE+HI DF + Y+F +  MLQEPLLV GF+Y +FL  I+++RL
Sbjct: 394 YLDTIGRPVVSFSKSNLVESHISDFTLHYSFSKTSMLQEPLLVSGFIYIIFLFTIVFLRL 453

Query: 92  DFSIHKSEHKD 60
           DFSI    HK+
Sbjct: 454 DFSITSHAHKE 464


>AY069605-1|AAL39750.1|  384|Drosophila melanogaster LD36528p
           protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 545 FSPSYWMWRCYHSYLYSIRLMRKLE 619
           FSPSYW+    HSYL+S     K++
Sbjct: 348 FSPSYWLGDRQHSYLHSEDFFVKMD 372


>AE013599-1612|AAF58441.1|  384|Drosophila melanogaster CG3850-PA
           protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 545 FSPSYWMWRCYHSYLYSIRLMRKLE 619
           FSPSYW+    HSYL+S     K++
Sbjct: 348 FSPSYWLGDRQHSYLHSEDFFVKMD 372


>BT025851-1|ABF85751.1|  571|Drosophila melanogaster IP14996p
           protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = -3

Query: 518 PRYPLFGGWRT-HYTLGYNVPSYEYLYHS--GNE-YLLKMRSIDHIFDDMQVDELVTKII 351
           P  PLF G R+ + +L   + S+  +Y +  G + ++ +M + DH +DD   +EL+ +  
Sbjct: 140 PMPPLFVGLRSMNISLASMIDSFLDMYDNPEGEDAFVYEMHATDHHYDDDITEELMLR-- 197

Query: 350 LPEGSTGIKLNIPYSVTRLP 291
            P+ +  +  ++P +  RLP
Sbjct: 198 -PDFTLSVAYSLP-ATMRLP 215


>AE014298-1097|AAS65276.1|  557|Drosophila melanogaster CG15332-PB,
           isoform B protein.
          Length = 557

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = -3

Query: 518 PRYPLFGGWRT-HYTLGYNVPSYEYLYHS--GNE-YLLKMRSIDHIFDDMQVDELVTKII 351
           P  PLF G R+ + +L   + S+  +Y +  G + ++ +M + DH +DD   +EL+ +  
Sbjct: 126 PMPPLFVGLRSMNISLASMIDSFLDMYDNPEGEDAFVYEMHATDHHYDDDITEELMLR-- 183

Query: 350 LPEGSTGIKLNIPYSVTRLP 291
            P+ +  +  ++P +  RLP
Sbjct: 184 -PDFTLSVAYSLP-ATMRLP 201


>AE014298-1096|AAF46303.1|  571|Drosophila melanogaster CG15332-PA,
           isoform A protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
 Frame = -3

Query: 518 PRYPLFGGWRT-HYTLGYNVPSYEYLYHS--GNE-YLLKMRSIDHIFDDMQVDELVTKII 351
           P  PLF G R+ + +L   + S+  +Y +  G + ++ +M + DH +DD   +EL+ +  
Sbjct: 140 PMPPLFVGLRSMNISLASMIDSFLDMYDNPEGEDAFVYEMHATDHHYDDDITEELMLR-- 197

Query: 350 LPEGSTGIKLNIPYSVTRLP 291
            P+ +  +  ++P +  RLP
Sbjct: 198 -PDFTLSVAYSLP-ATMRLP 215


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,986,522
Number of Sequences: 53049
Number of extensions: 844380
Number of successful extensions: 2485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2485
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3818998872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)