Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17h05
(814 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 25 1.1
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 1.9
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 3.4
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 23 3.4
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 23 3.4
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 23 3.4
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 4.4
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 4.4
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 4.4
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 23 4.4
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 23 4.4
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 23 4.4
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 4.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 4.4
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 23 4.4
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 23 4.4
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 4.4
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 4.4
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 4.4
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 4.4
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 23 4.4
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 4.4
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 23 4.4
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 4.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 4.4
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 23 4.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.9
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 7.8
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 7.8
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 24.6 bits (51), Expect = 1.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 680 YDYQQDHHSGPASVRAYKTLLPA 612
Y +QQDH SG + Y++ P+
Sbjct: 94 YQHQQDHGSGMDGMGGYRSASPS 116
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 1.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D++
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDTI 155
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T++++VK+D +
Sbjct: 106 GPEGIQINATELQKIKLEIH-RDLPGKSTTTSVEVKRDII 144
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ +VK+D++
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTAEVKRDTI 155
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 659 HSGPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
+ GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 104 NKGPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 144
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 23.0 bits (47), Expect = 3.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 659 HSGPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
+ GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 104 NKGPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 144
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.6 bits (46), Expect = 4.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 675 LSTRSSQWSC*CTCLQD 625
LS S+ WSC C LQ+
Sbjct: 919 LSLGSNPWSCRCKFLQE 935
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 106 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 144
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 106 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 144
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 122 GPKGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 160
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 22.6 bits (46), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 653 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSV 534
GP ++ T L +++ RD G +T+ ++VK+D +
Sbjct: 117 GPEGIQINATELQKIKLEIH-RDLPGKSTTTTVEVKRDII 155
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 489 NTLHTWLQCP 460
NTLH W CP
Sbjct: 468 NTLHHWHHCP 477
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 7.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 752 GNIAIEEVIEIEHTGAKLKG 693
GNI + +VIE+ T K G
Sbjct: 10 GNIHMSDVIEVIETDTKYNG 29
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 7.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 752 GNIAIEEVIEIEHTGAKLKG 693
GNI + +VIE+ T K G
Sbjct: 10 GNIHMSDVIEVIETDTKYNG 29
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,802
Number of Sequences: 438
Number of extensions: 5512
Number of successful extensions: 35
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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