Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17h01
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 42 1e-05
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 32 0.021
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 28 0.34
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 0.45
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 0.59
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 1.0
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 1.8
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 1.8
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 4.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 24 4.2
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 24 5.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 5.5
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 23 7.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 23 7.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 7.3
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.3
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 23 7.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 23 9.6
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 23 9.6
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 23 9.6
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 23 9.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 23 9.6
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 42.3 bits (95), Expect = 1e-05
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = -3
Query: 135 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 19
ENW +D D D ++WE+NW+D D+ DDF+ QL+ +L+K
Sbjct: 24 ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 31.9 bits (69), Expect = 0.021
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 141 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 16
P EN + D +DVS+ DN DV QD FN++ ++Q++ L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.9 bits (59), Expect = 0.34
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 129 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
W ++ +D SVW + +D + + + +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 0.45
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 123 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 1
TE+A DED SV E++ E++ +D+ + +Q+ K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 0.59
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -3
Query: 105 EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 7
+ +S+W + D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 66 RRLPSCLPKPIHLHHQRLLYPNFPR 140
R+ L + IH HH+RLL+PN R
Sbjct: 64 RKQAIILAREIH-HHRRLLHPNITR 87
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 123 TEDADDEDVSVWEDNWEDD-VIQDDF 49
T +A E++ W+DN ED+ ++ DF
Sbjct: 35 TNEAQREEIITWKDNREDEGEVKTDF 60
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -3
Query: 129 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 10
+G +D D+ED S +D ++ + + + + R++LEK+ +
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEKVSE 161
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/44 (20%), Positives = 26/44 (59%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 4
+++ E++DD+ + + EDDV ++ + + +Q + K+++
Sbjct: 723 DDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQ 766
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 135 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 13
E E +DDE +S ++ ED+ I ++ N + R+ +K +
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTR 319
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 90 WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 1
W+++W++ V QD Q + L+ K+ K+
Sbjct: 43 WKNSWDEWVEQDRILQWTEENLKTQKELKN 72
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/40 (30%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWEDDVIQDDFNQQL-RQQLEKLKDQK 4
E+A +ED + N+E+D+I D+ + Q+ ++LE+ ++++
Sbjct: 54 EEALEED----DTNYEEDIIDDEESAQVDEEELEEEEEEE 89
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 97 YIFIISVFCTPIF 135
Y+FI+ +F TPIF
Sbjct: 95 YMFILGMFVTPIF 107
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 120 LYPNFPREILRTRHPLL 170
LYPNFP ++ + P L
Sbjct: 79 LYPNFPAQLKENKKPKL 95
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 96 IHLHHQRLLYPNFPREILR 152
+H +HQRLL +FP++ R
Sbjct: 134 LHKNHQRLLGMSFPQDGFR 152
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 23.4 bits (48), Expect = 7.3
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Frame = +3
Query: 66 RRLPSCLPKPIHLH-----HQRLLYPN-----FPREILRTRHPLL-ANQGLLSVCQPL 206
+ +P LP PIH H H + YPN FP+ I LL A+ L V PL
Sbjct: 588 QNVPQQLPPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPL 645
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 87 PKPIHLHHQRLLYPNFPREI 146
P P + H R++ PN P EI
Sbjct: 23 PPPKEVLHTRVIVPNGPEEI 42
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 99 HLHHQRLLYPNFPREILRTRHP 164
H+ HQR YP FP L +P
Sbjct: 465 HVLHQRHFYPLFPGGSLEKCNP 486
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 135 ENWGTED---ADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 28
+ WG + + +D +++ W + + D+FN+ +Q+
Sbjct: 270 DGWGETNGSWSSTDDTKHYKNEWAESINLDNFNRPSQQE 308
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 120 EDADDEDVSVWEDNWED--DVIQDDFNQQLRQQLEKLKDQKS 1
E+ +DE+ S +ED++ D D DD ++ R + E K+ S
Sbjct: 397 EEEEDEEASDFEDSFADFSDGEADDLDES-RWRKEAAKEHNS 437
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 67 VVFPVVFPNRYIFIISVF 120
V FP + P+ YI+I S F
Sbjct: 328 VCFPTLNPDAYIYIYSYF 345
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 90 WEDNWEDDVIQDDFNQQLRQQLEKLK 13
+++NW V++ +FN LR+ EKL+
Sbjct: 543 FKENW---VVKSNFNNNLRKLHEKLQ 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 991,741
Number of Sequences: 5004
Number of extensions: 17310
Number of successful extensions: 73
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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