Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17g24
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.021
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.047
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.047
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.11
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.14
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.19
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.25
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 31 0.25
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 30 0.33
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 30 0.44
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 30 0.44
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.58
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.77
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.4
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.8
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 1.8
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 1.8
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.4
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 4.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 7.2
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 7.2
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.2
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.5
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 9.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 9.5
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 34.3 bits (75), Expect = 0.021
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Frame = -1
Query: 536 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 366
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 365 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 225
+ E KLN ++ A++LK + ++ES K G + F +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431
Query: 224 RIDDRIKLAFVLGQERHFRKRKMRFED 144
+I IK E FRK + E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.047
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -1
Query: 551 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 381
F+ ++ + T G + + + IE +L ++ +S F+ T+ + K++V F
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618
Query: 380 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 273
F+L+L L L++LQS + + S+ G T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.047
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 512 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 333
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 332 QSA 324
A
Sbjct: 433 VDA 435
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -1
Query: 518 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 339
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 338 MLQSAEKLKTAIVTESK 288
MLQ ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.5 bits (68), Expect = 0.14
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 12/168 (7%)
Frame = -1
Query: 722 GLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDN 543
GLE + IL +S ++Y+ + + QK R L K + N D
Sbjct: 358 GLE--YTQILVSQLESQRLYYESHLSNMSQKLSRVNEEL----VLKTKIATASSNANTDL 411
Query: 542 KSNALLHLQTEGERDDLRDKIESVLKHVK----KLNTNSEKFMVTHETFKNDVGNRFEQ- 378
+S + +RDD ++ S L+H+K + + +E +V +T + + +Q
Sbjct: 412 RSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQI 471
Query: 377 --FELRLNELDAKLNMLQ-----SAEKLKTAIVTESKNGTVTFPRDIT 255
+ ++N+L+ +L L S E K E +NGT+ P + T
Sbjct: 472 VSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEELQNGTIVLPNNST 519
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = -1
Query: 578 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 432
L K+L D++ LL Q E ER DL+ E+ +K ++ TNS+
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580
Query: 431 FMVTHETFKNDVGNRFEQFELRLNELDAKLNML 333
V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 452 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 285
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 407 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 249
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 30.7 bits (66), Expect = 0.25
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = -1
Query: 683 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 504
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GE 150
Query: 503 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 330
+++ ++ + + +LNT + E + RF + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 30.3 bits (65), Expect = 0.33
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -1
Query: 593 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 414
AT+QG +L+ +N L L E DD D+ + + ++ +
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376
Query: 413 TFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFP 267
T +GN E R ++ +L S+ + T I ++ + +T P
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLP 425
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 29.9 bits (64), Expect = 0.44
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = -1
Query: 683 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 504
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GE 150
Query: 503 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 330
+++ ++ + + +LNT + E + RF + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.9 bits (64), Expect = 0.44
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Frame = -1
Query: 725 KGLEIAHDDILDCNWDSDQVYHLNEIIFHK-QKSKRDLNSLGALFATKQGLLKILMRLNF 549
K EI + +CN D++ E++ + KR SL + K+ L K L N
Sbjct: 298 KKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMS-KEMLTK-LGESNV 355
Query: 548 DNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 369
D+ A + + E++ L + ++S+ + + + + + ++ E++ +GN+ +
Sbjct: 356 DDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNE 415
Query: 368 RLNELDAKLNMLQSAEKLKTAIVTESKNGT 279
LNE LQ+ K + VT T
Sbjct: 416 LLNENRVLKEKLQTYLDKKESNVTSKIKST 445
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 171 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 275
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.77
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -1
Query: 659 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 486
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 485 KIESVLKHVKKLNTNS 438
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = -1
Query: 647 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 468
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 467 KHVKKLNTNSE 435
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 500 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 336
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 335 LQ 330
+
Sbjct: 268 FE 269
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 653 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 534
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 98 AIQCINEKLYDKHYKIRKIAKRVI 27
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 476 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 297
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 296 ES 291
S
Sbjct: 409 GS 410
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 704 RAQFQDLCKNLLHCRIL 754
RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 548 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 375
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 374 ELRLNE 357
L++ E
Sbjct: 645 SLKVFE 650
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -1
Query: 557 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 378
+N N+ +HL L DK + L + K TN+ KF V ET +G Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623
Query: 377 FELRLNELDAK 345
R EL AK
Sbjct: 624 TMERQGELVAK 634
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 593 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 736
RT +P D +W +AC++ +N K R P C Q+C +Q D NL
Sbjct: 81 RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +3
Query: 294 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 452
+ YD FQ +Q+ ++ +Q FK PVA +LER+V K + CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 125 DGVHPNPLLAIQCINEKLYD 66
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = -1
Query: 617 LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 468
+ S G L A T+ G+ + LMR +F+ L+ GE+DD + E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 335 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 195
+ +A LK+ I ESK P D+T+ Q +F + I R+ LA+
Sbjct: 41 VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,000
Number of Sequences: 5004
Number of extensions: 68906
Number of successful extensions: 258
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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