Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17g22
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 48 1e-06
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 48 2e-06
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 44 2e-05
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 40 5e-04
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 40 5e-04
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 38 0.001
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 34 0.023
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 33 0.054
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 32 0.071
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 29 0.50
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 29 0.66
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 1.2
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.0
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 27 3.5
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 26 4.7
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 4.7
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 4.7
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 26 4.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.2
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 8.2
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 48.0 bits (109), Expect = 1e-06
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
+C CH PG N + C+ C +HFTC++PP+ + +W+C +C
Sbjct: 265 YCSACHGPG---NFLCCETCPNSFHFTCIDPPIEEK-NLPDDAWYCNEC 309
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 306 CDVCHQPG-DNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHC 172
C CH+ + +++ CD CN +H CL PPL P W C
Sbjct: 409 CFRCHKSALVSQSILACDYCNSYWHPDCLNPPLATLPSNL-RKWKC 453
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -3
Query: 330 AALCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
A L ++C VC + V+C +C K YH C+ PPL K P G+ W CA C
Sbjct: 254 ALLNEPSNCKVCKKWCAFDFSVQCADCKKYYHMDCVVPPLLKKP-PHGFGWTCATC 308
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
C+ C + ++ CD C YH +CL+PPL PK+ W+C C
Sbjct: 271 CEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKE---DWYCDAC 315
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -3
Query: 297 CHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCD 160
C P ++ C+ C++ YH CL+ ++K ++ + C CD
Sbjct: 1101 CRLPESGV-MIECEICHEWYHAKCLK--MSKKKLRQDEKFTCPICD 1143
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 303 DVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
D C G + C+ C +H +CLEPPL G SW C C
Sbjct: 118 DYCSACGGRGLFICCEGCPCSFHLSCLEPPLTPENIPEG-SWFCVTC 163
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVE 145
C +C Q G ++LV C C YH+ C+E P P + W C C P+ ++
Sbjct: 299 CKLCAQEG--SSLVTCCICQSNYHYACVEAPF--APFSDIHYWTCNSCIPSSLK 348
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCD 160
H C QP + ++ C+ C++ YH C++ ++K + + C CD
Sbjct: 1172 HYCFCRQP-EAGMMIECELCHEWYHAKCMK--MSKKKLRADEKFICPICD 1218
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 315 MTHCDVC---HQPGDNTNLVRCDECNKRYHFTCLEPPL-NKNPKKRGYSWHCADC 163
+T C VC H P N +V CD CN YH C PP+ + + W C C
Sbjct: 190 VTLCSVCQRGHSPLSN-RIVFCDGCNSPYHQLCHHPPIDDATVQDVDAEWFCMKC 243
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 306 CDVCH--QPGDNTNLVRCDECNKRYHFTCLEPPLNKN-PKKRGYSWHCADC 163
C VC Q +V CD CN +H C EP ++ W C DC
Sbjct: 235 CSVCQRLQSPPKNRIVFCDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDC 285
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 32.7 bits (71), Expect = 0.054
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -3
Query: 324 LCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYS 181
+C C N V CD C+ YH+ C P + N + R YS
Sbjct: 212 VCVCVKCHGREHRSSGKNFVYCDHCSNVYHYDC-SPLPSLNKETRNYS 258
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 32.3 bits (70), Expect = 0.071
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 300 VCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKN 202
+C +P D + ++ CD C +H TC+ P + N
Sbjct: 122 ICQKPDDGSWMLGCDGCEDWFHGTCVNIPESYN 154
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/52 (25%), Positives = 22/52 (42%)
Frame = -3
Query: 300 VCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVE 145
VC D+ ++C+ C H C+ N P+K + C C P ++
Sbjct: 7 VCPFEDDDGFTIQCESCEVWQHAVCVNIDANNVPEK----YFCEQCQPRPID 54
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.66
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +2
Query: 143 SSTSVGSQSAQCQE*PRFLGFLFRGGSKQVKWYLLLHSSHLTRLVLSPGWWHTSQCVMGQ 322
S++S GS++ L +F K +Y++ H + RL ++P WW S V
Sbjct: 301 SASSYGSRTQTPNARSCSLNIVFHKHKKVCTYYMIRHYAK-RRLFITPTWWLRSGSVFRG 359
Query: 323 SAAGGASDALVGPRLLLP 376
GG P L P
Sbjct: 360 LQFGGVQSISGLPPLTNP 377
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVEEN 139
C +C + L+ CD C+ YH CL ++ P + Y C +C + +EN
Sbjct: 125 CVICGRSDHAEVLLLCDGCDDAYHTYCLN--MDAVPIEEFY---CPNCVLLNYQEN 175
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 306 CDVCHQPG-DNTN-LVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
C +C++ +N+N +V CD CN H C P + W C C
Sbjct: 197 CVICNEAECENSNAIVFCDNCNTSVHQNCYGIPFVPEGQ-----WFCKKC 241
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 188 PRFLGFLFRGGSKQVKWYLLLHSSHLTRLV 277
P +LFR +QV+W LH S L+ +V
Sbjct: 33 PYIYRYLFRKTPRQVQWQCQLHESDLSCVV 62
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 466 RVLREFLHDRRRGAVVAVSGNV---EHLRVQRSVRFR 567
+ L+E DR++ VA SGNV E + V R++RF+
Sbjct: 83 KALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 119
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 321 CPMTHCDVCHQPGDNTNLVRCDEC---NKRYHFTCLEPPLNKNPKKRGYSWHCADCDPT 154
C +T + + D N + C+ C NK+Y P NK K + CA+C T
Sbjct: 368 CGVTETPLWRRTSDKLNFL-CNACGLYNKQYGVMRPLSPRNKGSSKALENLVCANCSST 425
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = -3
Query: 267 VRCDECNKRYHFTCLEPPLNKNPK-KRGYSWHCADC 163
++C C +H +CL PP Y + C C
Sbjct: 56 LQCSVCLNMFHLSCLSPPCTSMMGFSTNYQFVCKHC 91
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 466 RVLREFLHDRRRGAVVAVSGNV---EHLRVQRSVRFR 567
+ L+E DR++ VA SGNV E + V R++RF+
Sbjct: 83 KALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFK 119
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = -3
Query: 525 PTDSNDGPPPAVMKKLSKHAEQEVTKPPEEAPVPSV 418
P PPA Q+ PP++AP P V
Sbjct: 208 PPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPV 243
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 251 HSSHLTRLVLSPGWWHTSQCVMGQS 325
HS+H RL SPGWW+ + QS
Sbjct: 153 HSNH--RLA-SPGWWYGEDSCISQS 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,580
Number of Sequences: 5004
Number of extensions: 48227
Number of successful extensions: 123
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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