Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17g22
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 61 9e-10
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 49 3e-06
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 43 3e-04
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 43 3e-04
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 42 3e-04
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 42 3e-04
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 36 0.029
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 33 0.15
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 33 0.15
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 33 0.15
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ... 33 0.20
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.82
U88167-3|AAB42224.2| 363|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 29 3.3
AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical ... 29 4.4
Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 28 5.8
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 28 5.8
AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical ... 28 7.7
AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical ... 28 7.7
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 60.9 bits (141), Expect = 9e-10
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -3
Query: 333 PAALCP--MTH-CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
PA + P M + C VC + + +CDEC+K YH CL PPL + PK+ + W C +C
Sbjct: 517 PAIIAPKKMNYTCVVCRKSTEQHKQTQCDECHKSYHIGCLSPPLTRLPKRNNFGWICHEC 576
Query: 162 DPTDVEE 142
+ + E
Sbjct: 577 NESSDSE 583
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = -3
Query: 312 THCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
T C+ C GD NL+ CDEC+ YH C++P L+K P+ W C C
Sbjct: 564 TVCEGCGTGGDEANLLLCDECDVSYHIYCMKPLLDKIPQG---PWRCQWC 610
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = -3
Query: 312 THCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
T C+ C GD NL+ CDEC+ YH C++P L+K P+ W C C
Sbjct: 564 TVCEGCGTGGDEANLLLCDECDVSYHIYCMKPLLDKIPQG---PWRCQWC 610
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVE 145
C +C + NL+ CD C +H C++PPL + PK+ +W C C+ E
Sbjct: 320 CKICKE---TENLLLCDSCVCSFHAYCIDPPLTEVPKEE--TWSCPRCETVKPE 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVEE 142
+C+ C Q G+ L+ CD C + YH C++ + + P+ HC + P V+E
Sbjct: 258 YCEECKQDGE---LLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGPEVVKE 310
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVE 145
C +C + NL+ CD C +H C++PPL + PK+ +W C C+ E
Sbjct: 320 CKICKE---TENLLLCDSCVCSFHAYCIDPPLTEVPKEE--TWSCPRCETVKPE 368
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCDPTDVEE 142
+C+ C Q G+ L+ CD C + YH C++ + + P+ HC + P V+E
Sbjct: 258 YCEECKQDGE---LLLCDTCPRAYHTVCIDENMEEPPEGDWSCAHCIEHGPEVVKE 310
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 315 MTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
M +C +C + +N++ CD C YH C++PPL + P+ W C C
Sbjct: 328 MDYCRICKE---TSNILLCDTCPSSYHAYCIDPPLTEIPEG---EWSCPRC 372
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCD 160
+C+VC+Q G+ L+ CD C + YH C++ + + P+ W C C+
Sbjct: 267 NCEVCNQDGE---LMLCDTCTRAYHVACIDENMEQPPEG---DWSCPHCE 310
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 315 MTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
M +C +C + +N++ CD C YH C++PPL + P+ W C C
Sbjct: 328 MDYCRICKE---TSNILLCDTCPSSYHAYCIDPPLTEIPEG---EWSCPRC 372
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCD 160
+C+VC+Q G+ L+ CD C + YH C++ + + P+ W C C+
Sbjct: 267 NCEVCNQDGE---LMLCDTCTRAYHVACIDENMEQPPEG---DWSCPHCE 310
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 315 MTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
M +C +C + +N++ CD C YH C++PPL + P+ W C C
Sbjct: 328 MDYCRICKE---TSNILLCDTCPSSYHAYCIDPPLTEIPEG---EWSCPRC 372
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -3
Query: 309 HCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADCD 160
+C+VC+Q G+ L+ CD C + YH C++ + + P+ W C C+
Sbjct: 267 NCEVCNQDGE---LMLCDTCTRAYHVACIDENMEQPPEG---DWSCPHCE 310
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -3
Query: 333 PAALCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
P + P CD C + G ++ C C YH C+E P + Y W C DC
Sbjct: 326 PPPIDPSRPCDSCEKTGGE--MICCATCKIAYHPQCIEMPERMAALVKTYEWSCVDC 380
Score = 32.7 bits (71), Expect = 0.27
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCL 223
C +C++P +V CD C++ +H C+
Sbjct: 383 CSICNKPEKEDEIVFCDRCDRGFHTYCV 410
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNP 199
C +C ++ L+ CD+C++ YH CL P L K P
Sbjct: 314 CTICGTSENDDKLLFCDDCDRGYHLYCLTPALEKAP 349
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Frame = -3
Query: 312 THCDVCHQPG---DNT----NLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
T CD C NT +LV C +C + H +CL N + W C +C
Sbjct: 255 TSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGHPSCLNFNQNVTKIIKRSGWQCLEC 311
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 318 PMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNP-KKRGY--SWHCADCDPTD 151
P C VC + + C +C+ +H+ C P +++ ++ G+ W CA C D
Sbjct: 1115 PELSCQVCRRKTGTERKLMCKQCSTVFHYGCHRPTISRALFEEEGFKEGWWCAKCTKED 1173
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
protein C44B9.4 protein.
Length = 1150
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPL 211
C C+ D T +++CD C+ +H C+ PPL
Sbjct: 221 CAECNLKDDWTRMLKCDFCDLIWHQKCVTPPL 252
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 324 LCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC---DPT 154
LC + C+ C PG + C++C+K Y + P+ SW C DC DPT
Sbjct: 436 LCDSS-CETCTAPGP----MSCEKCSKGYGKGSIGYCRPCCPEGSTKSWQCEDCSKPDPT 490
Query: 153 DVEENN*YQDLVLIFKLVFS 94
+ ++N L+F +V S
Sbjct: 491 LLIDSNKSSGFGLMFWIVVS 510
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cuticle
protein 4, isoformd protein.
Length = 942
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -3
Query: 324 LCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC---DPT 154
LC + C+ C PG + C++C+K Y + P+ SW C DC DPT
Sbjct: 808 LCDSS-CETCTAPGP----MSCEKCSKGYGKGSIGYCRPCCPEGSTKSWQCEDCSKPDPT 862
Query: 153 DVEENN*YQDLVLIFKLVFS 94
+ ++N L+F +V S
Sbjct: 863 LLIDSNKSSGFGLMFWIVVS 882
>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
protein H20J04.2 protein.
Length = 1427
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
C C + +LV C EC+ YH C + +N + W C C
Sbjct: 1115 CRSCRRKAAAHDLVLCSECDNCYHLKCAKLDVNSDAPA---DWMCTSC 1159
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 324 LCPMTHCDVCHQPGDNTNLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
+CP+ C V + G N++ CD+C +H+ C+ L P W C C
Sbjct: 309 ICPV--CSVAYTVG--ANMIGCDQCQDWFHWHCV--GLTAEPTDS--KWFCTRC 354
>U88167-3|AAB42224.2| 363|Caenorhabditis elegans Hypothetical
protein D2092.4 protein.
Length = 363
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 522 TDSNDGPPPAVMKKLSKHAEQEVTKPPEEAPVPSVVDDTN 403
T ++D PPA KK K A +E PP +A DD N
Sbjct: 36 TVADDVAPPAPAKKSKKSAVKEAPAPPPKALSSKHKDDDN 75
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 519 DSNDGPPPAVMKKLSKHAEQEVTKPPEEAPVPSVVDDTNE 400
D +D PP ++SK EQ+ T+ P + V D+++
Sbjct: 102 DDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDD 141
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 519 DSNDGPPPAVMKKLSKHAEQEVTKPPEEAPVPSVVDDTNE 400
D +D PP ++SK EQ+ T+ P + V D+++
Sbjct: 102 DDDDDEPPTPSPRVSKKQEQQTTQQKTTQPAAAQVTDSDD 141
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 306 CDVCHQPG-DNTNLVRCDECNKRYHFTCLE 220
C VC + N + V+C C ++YH TC++
Sbjct: 900 CLVCLEDMVKNQDTVKCSTCKRQYHTTCVQ 929
>AF016442-9|AAB65921.1| 714|Caenorhabditis elegans Hypothetical
protein K12B6.8 protein.
Length = 714
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 306 CDVCHQP--GDNTNLVRCDECNKRYHFTCLEPPLNKN 202
C +CH ++ + ++C+ C K H C P L ++
Sbjct: 655 CAICHDEIMTNDKSAIKCERCTKSIHEKCAAPLLQQS 691
>Z75952-3|CAB00096.1| 286|Caenorhabditis elegans Hypothetical
protein F55H12.6b protein.
Length = 286
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 315 MTHCDVCHQPGDNTNLVRCDECNKRY 238
M+H ++ P D+ N++RC C K Y
Sbjct: 1 MSHINLYSLPTDHKNMIRCRYCEKIY 26
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -3
Query: 306 CDVCHQPGDNT--NLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
CDVC + +V CD CN H C +P + W CA C
Sbjct: 240 CDVCRISDCDVADEMVFCDMCNTCVHMVCAGIEELPDPAE---PWKCAKC 286
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Frame = -3
Query: 306 CDVCHQPGDNT--NLVRCDECNKRYHFTCLEPPLNKNPKKRGYSWHCADC 163
CDVC + +V CD CN H C +P + W CA C
Sbjct: 281 CDVCRISDCDVADEMVFCDMCNTCVHMVCAGIEELPDPAE---PWKCAKC 327
>AF078783-6|AAC26923.1| 473|Caenorhabditis elegans Hypothetical
protein H10E21.5 protein.
Length = 473
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 306 CDVCHQPGDNTNLVRCDECNKRYHFTCLEP 217
C VC P +++R C YH +C++P
Sbjct: 227 CAVCLDPYQLQDVIRLLPCKHIYHKSCIDP 256
>AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical
protein M151.3 protein.
Length = 836
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 ISTIN*VIVHNLSNLSLTLYVTFQLNT-NLKIKTR 124
+ T + V VHN+S L L + T +LNT +L +K+R
Sbjct: 426 LRTAHGVDVHNISQLQLQIKATQELNTDSLPLKSR 460
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,434
Number of Sequences: 27780
Number of extensions: 305684
Number of successful extensions: 1022
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -