Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g21
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.60 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 296 IVRTPGGRLVYQYVKKPKKI 237
           + +  G RLVYQ+V  PK I
Sbjct: 527 LAKVDGQRLVYQFVDVPKDI 546


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 400 LHHSNHW*LL*FSKFLVRLH 459
           +HH+NH  +L  S FL   H
Sbjct: 281 VHHANHHAILGHSGFLCERH 300


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 249 LFDILINQAATRCPY 293
           LFD+  N++  +CPY
Sbjct: 550 LFDLDYNESEEQCPY 564


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 107 VKQRIVRAFLIEEQKIVKV 51
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 107 VKQRIVRAFLIEEQKIVKV 51
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 222 LTTPWDLLGLFDILI 266
           +TTPWD   ++  L+
Sbjct: 168 ITTPWDYYYIYHTLV 182


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 222 LTTPWDLLGLFDILI 266
           +TTPWD   ++  L+
Sbjct: 183 ITTPWDYYYIYHTLV 197


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 KITLDFNILFTNTQYPNL 503
           K+ +DF + F N   PN+
Sbjct: 490 KVLIDFWVSFVNNGVPNV 507


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 222 LTTPWDLLGLFDILI 266
           +TTPWD   ++  L+
Sbjct: 71  ITTPWDYYYIYHTLV 85


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 KITLDFNILFTNTQYPNL 503
           K+ +DF + F N   PN+
Sbjct: 490 KVLIDFWVSFVNNGVPNV 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,350
Number of Sequences: 438
Number of extensions: 2787
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)