Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g17
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    29   0.84 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.5  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   2.6  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    26   5.9  

>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNIS------LPATSE 774
           ++E K    I  + + L  G G PG  +    D E S  ++S   N+       LPA+ E
Sbjct: 598 ERETKEAEKIRELSVRLNGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLPASLE 657

Query: 775 LASTRSPS 798
           LA+T+  S
Sbjct: 658 LANTQGAS 665


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 317  QILQSNDQLYLCKYCKWRI----DKLLRFIRQCHLASEMVWRDLKKVRIHIGCSLLQHQL 484
            ++L S  +LY  K+    +     KL   +      +++  R L +V+I +  S +  QL
Sbjct: 906  ELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQAKITQRKLSEVQIALADSKMNQQL 965

Query: 485  SSSDCTSLYLP 517
            S  D T ++LP
Sbjct: 966  SGKDSTDVHLP 976


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 664 ALGRGLPGFGNTAVPDGEASSTASSLSRN--ISLPATSELASTR-SPSVT 804
           AL   LPG  NT +P+G +++T +S++ N   S  A+ ++ + + SPS++
Sbjct: 89  ALSHALPG--NTNLPNGTSTNTMASMAANGGASSVASKQMGANQISPSLS 136


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 755 DMFLLRDEAVEDASPSGTAVLPNPGNP 675
           D  ++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,282
Number of Sequences: 5004
Number of extensions: 75406
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)