Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17g17
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi... 31 5.3
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome... 31 5.3
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein. 31 5.3
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein. 31 5.3
BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein. 31 5.3
BC033093-1|AAH33093.1| 958|Homo sapiens Treacher Collins-France... 30 9.3
BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for IM... 30 9.3
BC014559-1|AAH14559.1| 958|Homo sapiens Treacher Collins-France... 30 9.3
BC011764-1|AAH11764.1| 958|Homo sapiens Treacher Collins-France... 30 9.3
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p... 30 9.3
>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar
trafficking phosphoprotein protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 619 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 619 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 619 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 31.1 bits (67), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 619 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 213 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 251
>BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.
Length = 1126
Score = 31.1 bits (67), Expect = 5.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 619 EAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
E KA I+ + A A +G PG G T P G+A + AS
Sbjct: 198 EVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 236
>BC033093-1|AAH33093.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC016144-1|AAH16144.1| 1414|Homo sapiens Unknown (protein for
IMAGE:3921754) protein.
Length = 1414
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC014559-1|AAH14559.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>BC011764-1|AAH11764.1| 958|Homo sapiens Treacher
Collins-Franceschetti syndrome 1 protein.
Length = 958
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
protein.
Length = 1488
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 613 QKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTAS 735
+ + KA I+ + A A +G PG G T P G+A + AS
Sbjct: 288 RSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVAS 328
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,299,683
Number of Sequences: 237096
Number of extensions: 2614246
Number of successful extensions: 9532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9528
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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