Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g17
         (852 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p pro...    33   0.66 
AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-P...    33   0.66 
U04246-1|AAA62472.1| 1284|Drosophila melanogaster putative potas...    31   2.7  
AE013599-2592|AAF57772.2| 1284|Drosophila melanogaster CG5076-PA...    31   2.7  
AE014134-271|AAF51357.1| 1316|Drosophila melanogaster CG14351-PA...    29   6.1  

>AY052132-1|AAK93556.1|  920|Drosophila melanogaster SD08128p
           protein.
          Length = 920

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 676 GLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT 804
           G PG G++ VP   +SS+ASS +++     T+  ++  SPS T
Sbjct: 29  GTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71


>AE014296-3415|AAF51638.1|  920|Drosophila melanogaster CG11399-PB
           protein.
          Length = 920

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 676 GLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT 804
           G PG G++ VP   +SS+ASS +++     T+  ++  SPS T
Sbjct: 29  GTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPT 71


>U04246-1|AAA62472.1| 1284|Drosophila melanogaster putative
           potassium channel subunit protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +1

Query: 661 LALGRGLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT*QKKIH 822
           L LG GLPG G  A  DG+   T +    N+ +PA   +   RS +V  Q   H
Sbjct: 170 LGLG-GLPGLGGPAASDGD---TEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGH 219


>AE013599-2592|AAF57772.2| 1284|Drosophila melanogaster CG5076-PA
           protein.
          Length = 1284

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +1

Query: 661 LALGRGLPGFGNTAVPDGEASSTASSLSRNISLPATSELASTRSPSVT*QKKIH 822
           L LG GLPG G  A  DG+   T +    N+ +PA   +   RS +V  Q   H
Sbjct: 170 LGLG-GLPGLGGPAASDGD---TEAGEGNNLDVPAGCNMGRRRSRAVLYQLSGH 219


>AE014134-271|AAF51357.1| 1316|Drosophila melanogaster CG14351-PA
           protein.
          Length = 1316

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 583 NKNRTHERHAQKEAKAQRGIVFIVLALALGRGLPGFGNTAVPDGEASSTASSLSRNI 753
           N   T +R   +  +  + + F+ L+    + LPG G   V DG  + TA +L RN+
Sbjct: 207 NLKGTKQRKVPESIRGLKSLAFLDLSQNGIKELPGAGGIRVFDGLDALTALNLERNL 263


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,068,225
Number of Sequences: 53049
Number of extensions: 797753
Number of successful extensions: 2304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)