Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g12
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    30   2.8  
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721...    28   8.5  

>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
            1414639-1414725,1416244-1416411,1416785-1416958,
            1417662-1417720,1418132-1420154,1420549-1420647,
            1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 305  TTTPETLVFFVKFATSKKVVLC-SQSNL*PKMAKECLNG 418
            T T +    FVK   S    LC  Q NL P    ECLNG
Sbjct: 998  TLTTQMRAIFVKTLCSYSTGLCYEQRNLDPAFGPECLNG 1036


>06_01_0934 -
           7212408-7212794,7212887-7213416,7214192-7214302,
           7214322-7214811
          Length = 505

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 605 TLAVCYWLYHAYVRYYLRTVDKRFVPTSSEKDNDT*NSIQHSILCDQFTAMHSVTGSYIH 784
           ++ +C    +AY   +L   DKRF+    E    T  ++  SILC    ++    GS+  
Sbjct: 382 SITMCLQACNAYTSRFLNRADKRFLEDKEESSVYT--NVSQSILC---ISVLIAAGSFAA 436

Query: 785 KFT 793
            FT
Sbjct: 437 AFT 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,635
Number of Sequences: 37544
Number of extensions: 330857
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)