Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g12
         (869 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3683|AAZ66071.1|  178|Drosophila melanogaster CG33766-P...    34   0.29 
BT010048-1|AAQ22517.1| 1654|Drosophila melanogaster LD26355p pro...    29   8.3  
AE014297-3630|AAF56339.1| 1654|Drosophila melanogaster CG11375-P...    29   8.3  

>AE014296-3683|AAZ66071.1|  178|Drosophila melanogaster CG33766-PA
           protein.
          Length = 178

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 17  SLQNEDSFQKIFSYII*VCYLLNYIRNKLEKK 112
           S+QN   FQKIF Y + +C LL   RN + KK
Sbjct: 75  SMQNSYGFQKIFQYTLDMCSLLAQRRNNMFKK 106


>BT010048-1|AAQ22517.1| 1654|Drosophila melanogaster LD26355p
           protein.
          Length = 1654

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 NSIQHSILCDQFTAMHSVTGSYIHKFTICRYF 808
           N+I+H+I  D++ A+  V   Y   F+ CR +
Sbjct: 560 NTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQY 591


>AE014297-3630|AAF56339.1| 1654|Drosophila melanogaster CG11375-PA
           protein.
          Length = 1654

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 713 NSIQHSILCDQFTAMHSVTGSYIHKFTICRYF 808
           N+I+H+I  D++ A+  V   Y   F+ CR +
Sbjct: 560 NTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQY 591


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,500,685
Number of Sequences: 53049
Number of extensions: 624181
Number of successful extensions: 1060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)