Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17g10
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 316 2e-87
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 316 2e-87
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 206 2e-54
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 109 6e-25
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 5e-06
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 28 1.8
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 4.2
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 4.2
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.5
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 5.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 7.3
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 9.6
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 9.6
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 316 bits (776), Expect = 2e-87
Identities = 144/219 (65%), Positives = 169/219 (77%)
Frame = -2
Query: 805 RARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 626
RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG
Sbjct: 615 RARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEG 674
Query: 625 VMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 446
M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ
Sbjct: 675 PMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQ 734
Query: 445 CPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 266
E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFP
Sbjct: 735 VSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFP 794
Query: 265 QCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 149
Q VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 795 QLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 316 bits (776), Expect = 2e-87
Identities = 144/219 (65%), Positives = 169/219 (77%)
Frame = -2
Query: 805 RARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 626
RAR + +++ +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG
Sbjct: 615 RARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEG 674
Query: 625 VMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 446
M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ
Sbjct: 675 PMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQ 734
Query: 445 CPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 266
E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR T GQAFP
Sbjct: 735 VSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFP 794
Query: 265 QCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 149
Q VFDHW + GDP +P SKP +V E RKRKGLKE +P
Sbjct: 795 QLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 206 bits (504), Expect = 2e-54
Identities = 94/204 (46%), Positives = 131/204 (64%), Gaps = 4/204 (1%)
Frame = -2
Query: 802 ARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAA 635
+ + + Y++D+ +R IW FGP+ G NIL D + LN +K+ + GFQW
Sbjct: 728 SEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGT 787
Query: 634 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLC 455
+EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+
Sbjct: 788 REGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMV 847
Query: 454 EIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 275
E+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQ
Sbjct: 848 EVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQ 907
Query: 274 AFPQCVFDHWQVLPGDPCEPQSKP 203
A Q VFDHWQV+PGDP + KP
Sbjct: 908 AMCQMVFDHWQVVPGDPLDKSIKP 931
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 109 bits (261), Expect = 6e-25
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Frame = -2
Query: 751 IWCFGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGVMAEENL 605
I FGP+ GPNIL D +K ++ +++ + VV FQ +G + E +
Sbjct: 751 IIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPV 810
Query: 604 RGV-----RFNIYDVTLHTDAIHRGG----GQIIPTTRRCLYACLLTAQPRLMEPVYLCE 452
+G+ +F+I D + + + GQ+I + + L PRLM +Y C+
Sbjct: 811 QGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCD 870
Query: 451 IQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 272
+Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A
Sbjct: 871 VQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAA 930
Query: 271 FPQCVFDHWQVLPGDP 224
+PQ +F +++L +P
Sbjct: 931 YPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.4 bits (105), Expect = 5e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Frame = -2
Query: 649 FQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 470
F A K+G + ++ RF + D H ++ T L A P ++E
Sbjct: 619 FYEALKKGFLIGHPIKNCRFVLEDGAYHPVDSSELAFRL--ATISAFRTAFLQANPMVLE 676
Query: 469 PVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 290
P+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R+
Sbjct: 677 PIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRA 734
Query: 289 NTGGQ 275
T G+
Sbjct: 735 LTKGK 739
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.8
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Frame = -3
Query: 639 PLRKELWLKRICVVLDSTSMM*HSILMPSIEV-VAKSFQQLEDACTHVC*LLS--PVSWS 469
P K+ W CV L+ H+ + P+++V + + D+ + ++ PV+
Sbjct: 50 PQLKQTWQFNFCVDLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPVNVK 109
Query: 468 LYIFVKFSVLK*LWXXXXXXXXXXXXTFSKSPRWQVHLCSL*RPTYLSMSRSVL-LPICV 292
LY SV +W S + +H +L P ++ MS+++ P+
Sbjct: 110 LY-----SVYVPMWGTHHSKIMVNFFK-DDSCQIVIHTANLVEPDWIGMSQAIFKTPLLY 163
Query: 291 PTPADRPSRSAYSTIGRSS 235
P D S S+ G S
Sbjct: 164 PKANDSLSTSSVPEYGNPS 182
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 467 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 610
++ ET L ++ Q + CW++L+TTS + + II + TT I
Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 731 LGAKAPNLTGFGNIVFVLFCKIPSAS 808
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 522 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 641
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 546 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 686
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 763 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 674
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 250 HWQVLPGDPCEPQSKPYNVVQETRKRK 170
H+Q L GDP + PY VQ RK
Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 532 IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 356
IP T RC+ + + + P+L P L + CP + + V+ H F + P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444
Query: 355 MFIVKAY 335
+K+Y
Sbjct: 445 ALALKSY 451
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 446 LNFTKIYRLHETGLSS*QTCVQASSSCWND-----LAT--TSMDGISMECYIIDVESNTT 604
L+++K++ LH +Q S S +ND LA ++ + + Y++ E +
Sbjct: 192 LSYSKVFFLH---------LLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLA 242
Query: 605 QILFSHNSFLSGPLESSHNRVLN 673
Q + SFL L S HN+V N
Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTN 265
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 685 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 593
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,079
Number of Sequences: 5004
Number of extensions: 79930
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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