Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g10
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   408   e-114
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   405   e-113
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   213   2e-55
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       208   3e-54
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    82   4e-16
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   2e-05
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  408 bits (1005), Expect = e-114
 Identities = 181/219 (82%), Positives = 201/219 (91%)
 Frame = -2

Query: 805  RARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 626
            RA+ L EKYEYDVTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG
Sbjct: 625  RAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREG 684

Query: 625  VMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 446
            V+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQ
Sbjct: 685  VLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQ 744

Query: 445  CPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 266
            CPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFP
Sbjct: 745  CPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 804

Query: 265  QCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 149
            QCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 805  QCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  405 bits (996), Expect = e-113
 Identities = 180/219 (82%), Positives = 200/219 (91%)
 Frame = -2

Query: 805  RARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 626
            RA+Y  EKYEY VTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EG
Sbjct: 625  RAKYPGEKYEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREG 684

Query: 625  VMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 446
            V+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQ
Sbjct: 685  VLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQ 744

Query: 445  CPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFP 266
            CPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFP
Sbjct: 745  CPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 804

Query: 265  QCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 149
            QCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 805  QCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  213 bits (519), Expect = 2e-55
 Identities = 102/229 (44%), Positives = 144/229 (62%), Gaps = 16/229 (6%)
 Frame = -2

Query: 796  YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKE 629
            +   KY +D+  AR IW FGP+ TGPNIL+D +   +     L+ +++S+V GFQWA +E
Sbjct: 721  FFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATRE 780

Query: 628  GVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 449
            G + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+
Sbjct: 781  GPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 840

Query: 448  QCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAF 269
              P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF
Sbjct: 841  VAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAF 900

Query: 268  PQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 158
                F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 901  CMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  208 bits (509), Expect = 3e-54
 Identities = 101/229 (44%), Positives = 143/229 (62%), Gaps = 16/229 (6%)
 Frame = -2

Query: 796  YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKE 629
            +   KY +D+  AR IW FG + TGPNIL+D +   +     L+ +++S+V GFQWA +E
Sbjct: 596  FFQTKYNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATRE 655

Query: 628  GVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 449
            G + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+
Sbjct: 656  GPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 715

Query: 448  QCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAF 269
              P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV +SFGF  DLR +T GQAF
Sbjct: 716  VAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAF 775

Query: 268  PQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 158
                F HWQ++PGDP +          Q  P+     + +TR+RKGL E
Sbjct: 776  CMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
 Frame = -2

Query: 754  KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGVMAEENL 605
            +IW FGPE    NIL +  +              +     ++VAGF+     G +  E +
Sbjct: 653  QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712

Query: 604  RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 431
             G+   +  ++V     AI   GGQ++   +    A       RL+  +Y C +     A
Sbjct: 713  HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQA 769

Query: 430  VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 251
            +G ++ VL++R+  V  E     T +F V + +PV ESF F   LR  T G A  Q  F 
Sbjct: 770  LGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFS 829

Query: 250  HWQVLPGDP 224
            HWQV+  DP
Sbjct: 830  HWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = -2

Query: 388 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 224
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 31/126 (24%), Positives = 53/126 (42%)
 Frame = -2

Query: 652 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 473
           G      EG + +  + G+   I D + H  A+      +I T +  +      A   L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643

Query: 472 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 293
           EP+   E   P    G +   L +R   +       G    I +A  P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701

Query: 292 SNTGGQ 275
           S T G+
Sbjct: 702 SLTEGK 707


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -2

Query: 544 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 383
           GG+I P       ++C+   L + +  L EPV   +I+   +     I   L RRR H  
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624

Query: 382 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 278
                  T +  + A LP++E+   +  +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 675 KLRTLLWLDSSGPLRKELWLKRICVVLDST 586
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 675 KLRTLLWLDSSGPLRKELWLKRICVVLDST 586
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 REDLPMVEYALREGLSAGVGTQIGSKTERLID 328
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 544  GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 398
            G Q +  T RCL A +L  +  +M   +  +    + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 12  LRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 119
           LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 294 LRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,204,026
Number of Sequences: 27780
Number of extensions: 471624
Number of successful extensions: 1293
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)