Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g07
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical pr...    32   0.59 
U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    29   3.2  

>Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical
           protein F40D4.9a protein.
          Length = 338

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +2

Query: 113 RLFYLKSVLLAIQLRLGLYKCPKTSRVVLLINNFTSLN*IKKIHITVIFFTKLKTILKYE 292
           ++F L  V LAI+ R  LY CP T +++ L+ N+     IK I+I+      +  IL Y 
Sbjct: 138 QVFQLFIVALAIE-RFLLYFCPSTEKLITLVQNYVHQR-IKCIYISCAIKDLVIFILPYS 195

Query: 293 N 295
           +
Sbjct: 196 S 196


>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 297 RFSYFKIVFNFVKNITVMCIFLI 229
           ++ +FKI+F   KN T MC+ L+
Sbjct: 314 KYEFFKIIFMLFKNKTCMCVILM 336


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 383 TFATHRKYILIKFKNIN*LKMFICLAIVFKNCELT 487
           +FAT  +Y+ + F+N+   +++  +A ++ +CE+T
Sbjct: 156 SFATDNEYLGVVFQNLRGKRLYPAVATLYGDCEIT 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,352
Number of Sequences: 27780
Number of extensions: 342068
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)