Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g02
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   2.4  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   7.2  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 273 PSN*NALLLHGRNKQVVVPTRADSQEVLPPVEHXXXXXXXLSGNLPK 133
           P N N+ L+  R++QV     +D     PP E+        +G LPK
Sbjct: 9   PINHNSALVEARDEQVNTTACSDDLLNAPPYEYDTEGNPSWAGALPK 55


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 728 NDSSAQRATKRHNLPPR 678
           +DSSA+R  + HNLP R
Sbjct: 23  SDSSARRGKRNHNLPHR 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,175
Number of Sequences: 5004
Number of extensions: 63127
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)