Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g02
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244...    31   0.81 
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     29   4.3  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    29   5.7  
03_05_0051 - 20288456-20291728                                         29   5.7  
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499...    28   7.6  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   7.6  

>10_08_0753 +
           20324011-20324113,20324210-20324231,20324344-20324400,
           20324704-20324785,20324903-20324998,20325265-20325389,
           20325484-20325502,20325598-20325744
          Length = 216

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 415 FFCCCLGRWSSPDVKWLLEPINIYN 341
           F CCCL  W  P V ++L    +YN
Sbjct: 33  FTCCCLSLWCGPCVSYMLRKRALYN 57


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 293 YTDTLELISQGGWRIYVIDVNGLQ 364
           Y+DT EL+ + GW+ +V D NG+Q
Sbjct: 78  YSDTGELVLRSGWKEFV-DANGVQ 100


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 477 FSYDVVTFNYRQ*TDFTDNRFFFVVVWVGGAHLMLSGYWSPLTSI 343
           FS+  + F +R+ T  T  RF  +++W+    ++ S Y + LTSI
Sbjct: 631 FSFSTLFFAHREDTRSTLGRFV-IIIWLFVVLIIQSSYTASLTSI 674


>03_05_0051 - 20288456-20291728
          Length = 1090

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 123  SKGVLVSFQKDRDLTTDHVQLVVEPLVSPR 212
            + GV+ SFQ  R L  DH++++  PL+  R
Sbjct: 941  TNGVVASFQSLRSLIVDHMRILTCPLLRER 970


>10_02_0078 -
           4992019-4992594,4993156-4993248,4995984-4996202,
           4996282-4996345,4996429-4996485,4996573-4996671,
           4997296-4997327
          Length = 379

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 603 NVLLYSSCQSIAHSSR-RETDVEHCQTR 683
           N+L Y+S QS AHSSR R T    C T+
Sbjct: 137 NILKYASAQSPAHSSRSRSTQKIICSTQ 164


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -2

Query: 477 FSYDVVTFNYRQ*TDFTDNRFFFVVVWVGGAHLMLSGYWSPLTSI 343
           FS+  + F++++  +   +RF  V++WV    ++ S Y + LTS+
Sbjct: 627 FSFSTLVFSHKEKLESNLSRFV-VIIWVFVVLILTSSYTASLTSM 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,555,996
Number of Sequences: 37544
Number of extensions: 405161
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)