Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g01
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   2.4  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   4.2  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   5.5  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 IFQ*WLMLSIGFLYTFVRTVRSPTLSYLNCSPK 68
           IFQ WL LS   L T +R + SP  +  N + K
Sbjct: 332 IFQQWLPLSTAILLTAIREIPSPINAQANRARK 364


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/79 (21%), Positives = 36/79 (45%)
 Frame = +3

Query: 141  DSISHY*NMLKLVLQVSFAQ*NLCSFTYFLF*KIDNVKTRIIIPNRTFQALSKNISHLCI 320
            D  +HY N   ++L++ +   +  +F  +L     N   +I   ++   + +K + H+  
Sbjct: 804  DEKTHYENTYVMILRLIYGIVDQSAFEDYLRFYYGNKAYKIYTIDKLVWSAAKQVHHIVS 863

Query: 321  VLYYKNIFKSKQQNQRATP 377
               YK +    +QN  A+P
Sbjct: 864  DGKYKFVTSLVEQNSSASP 882


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 442 KTPDQEKIMFRITLGVYRTLN 380
           K  D+EK+M+ +  GVY +LN
Sbjct: 317 KLDDEEKVMYYVNDGVYGSLN 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,387
Number of Sequences: 5004
Number of extensions: 71478
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)