Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17g01
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306     29   3.3  
05_01_0234 - 1743784-1744017,1748103-1749068                           28   7.7  
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453...    28   7.7  

>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
          Length = 433

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -3

Query: 628 YLDEKRLQ*LVPFLSSSICCSGHHHTLQTFHREVAKPTEVI-----INFRHFGMGV-TDS 467
           + DE   + L   L+S++    H H+L  FHR+V     ++     + F  FG+   TD+
Sbjct: 152 HYDEPAARRLFVQLASAVA---HAHSLDVFHRDVKSENLLLDERGDLRFTDFGLSTFTDA 208

Query: 466 QQQTKPTD 443
            QQ   TD
Sbjct: 209 DQQLGATD 216


>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 306 SHLCIVLYYKNIFKSKQQNQRATPIFKV 389
           SH  I+ Y+KN+ +  Q+++  TPI KV
Sbjct: 319 SHETIINYFKNLCRWNQRSKEDTPIGKV 346


>02_05_0398 -
           28644632-28644889,28644997-28645032,28645101-28645364,
           28645439-28645522,28645718-28645798,28645888-28645965,
           28646571-28646672,28646754-28646849,28646955-28647161,
           28647246-28647493,28647577-28647773,28647997-28648112
          Length = 588

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 78  VALNVIFAHSVIDKSLSXIIGLRRQI 1
           VAL  +F H+ ID +L  ++G +R++
Sbjct: 519 VALTEVFKHNSIDNALQSVVGHKREV 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,309
Number of Sequences: 37544
Number of extensions: 379707
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)