Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f23
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    38   3e-04
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    31   0.053
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   0.86 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   1.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   1.1  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   2.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   2.6  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   2.6  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    23   8.1  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    23   8.1  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    23   8.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    23   8.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    23   8.1  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   8.1  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    23   8.1  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 38.3 bits (85), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = -3

Query: 136 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQ 29
           ENW  +D   D  D ++WE+NW+D D+  DDF+ QL+ +
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAE 62


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 30.7 bits (66), Expect = 0.053
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 142 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           P EN   +  D +DVS+  DN   DV QD FN++  +Q
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQ 414


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 124 TEDADDED--VSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           TE+A DED  V + ED  E+D   ++ +++ ++ P K
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSK 238


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 67  RRLPSCLPKPIHLHHQRLLYPNFPR 141
           R+    L + IH HH+RLL+PN  R
Sbjct: 64  RKQAIILAREIH-HHRRLLHPNITR 87


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 17  SFSRLLPQLLIKIILDDVVFPVVFPNRYIFIISVFCTPIFRGKFFELVI 163
           SFS LL +LL   +L   V+P+V         S   + +  G FF  V+
Sbjct: 341 SFSSLLKKLLTLFVLSFFVYPLVQEFCLFLACSFVVSFLLHGSFFLAVL 389


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 124 TEDADDEDVSVWEDNWEDD-VIQDDF 50
           T +A  E++  W+DN ED+  ++ DF
Sbjct: 35  TNEAQREEIITWKDNREDEGEVKTDF 60


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKT 17
           E    E +DDE +S  ++  ED+ I ++ N + R+   KT
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKT 318


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPG 23
           A +W   +A  E V V +     D +Q D ++ +  +PG
Sbjct: 283 ARSWNEYEAQGEPVPVEQVTHLQDDVQSDTSEIIENEPG 321


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 98  YIFIISVFCTPIF 136
           Y+FI+ +F TPIF
Sbjct: 95  YMFILGMFVTPIF 107


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 124 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPG 23
           +E    ED++ W   W   V +D     L + PG
Sbjct: 34  SEQFTSEDITTWRSRWRAPVNKDLGVWDLVEAPG 67


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 121 LYPNFPREILRTRHPLL 171
           LYPNFP ++   + P L
Sbjct: 79  LYPNFPAQLKENKKPKL 95


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 97  IHLHHQRLLYPNFPREILR 153
           +H +HQRLL  +FP++  R
Sbjct: 134 LHKNHQRLLGMSFPQDGFR 152


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
           E+A +ED    + N+E+D+I D+ + Q+ ++  + E  E
Sbjct: 54  EEALEED----DTNYEEDIIDDEESAQVDEEELEEEEEE 88


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
 Frame = +1

Query: 67  RRLPSCLPKPIHLH-----HQRLLYPN-----FPREILRTRHPLL-ANQGLLSVCQPL 207
           + +P  LP PIH H     H +  YPN     FP+ I      LL A+  L  V  PL
Sbjct: 588 QNVPQQLPPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPL 645


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 88  PKPIHLHHQRLLYPNFPREI 147
           P P  + H R++ PN P EI
Sbjct: 23  PPPKEVLHTRVIVPNGPEEI 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,965
Number of Sequences: 5004
Number of extensions: 19551
Number of successful extensions: 69
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)