Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f23
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 46 8e-06
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 45 1e-05
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 30 0.33
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 0.44
07_03_1325 + 25830838-25831440 29 0.77
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 29 0.77
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 27 2.3
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 2.3
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 27 2.3
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 27 3.1
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 27 3.1
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 27 3.1
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 27 4.1
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 26 5.4
05_07_0193 - 28319783-28320211,28320798-28320925,28321543-283218... 26 5.4
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 26 5.4
02_01_0130 - 938530-939990 26 5.4
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 26 7.2
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 26 7.2
04_04_1420 + 33441260-33443704 26 7.2
06_01_0144 + 1089090-1091390 25 9.5
03_06_0230 - 32518749-32519143,32519301-32519589 25 9.5
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 45.6 bits (103), Expect = 8e-06
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
+ W ++ DE + WED+W+DD + DDF+ QLR++
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDFSLQLRKE 67
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 44.8 bits (101), Expect = 1e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
++ W ++ +E V WED+W+DD + DDF+ QLR++
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKE 112
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDD---VIQDDFNQQLRQQPG 23
ENW ED+D ED +++ EDD + +DF+ + ++ G
Sbjct: 199 ENWMEEDSDSEDEEYLDEDEEDDDEHLDLEDFDDEEEEEEG 239
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDD 68
AEN G +DA DED S E N ED+
Sbjct: 83 AENQGDDDAGDEDASEEEGNDEDE 106
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.1 bits (62), Expect = 0.77
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQD 56
+DAD+ED+ W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -3
Query: 142 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
P + ++ DDE++ + +D D+ DD +++L ++ G E E
Sbjct: 62 PVSDDDEDEEDDEEIDIRDDADVDEEYDDDDDEELDEESGGEEEEE 107
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQP 26
+E+ + ++DDE W DD+I D +++ Q+P
Sbjct: 64 SESSKSNNSDDEAHQFWRKQLPDDIIPDFSFEKIEQEP 101
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 130 WGTEDADDEDVSVWEDNWEDD 68
WGT+D DD+ E++ EDD
Sbjct: 328 WGTDDDDDDQQPAEEEDEEDD 348
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 85 LPKPIHLHHQRLLYPNFPREILRTRHPLLANQGL----LSVCQPLHC 213
L +P HLHH R L + + ++R + L LS C PL C
Sbjct: 590 LIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRC 636
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 85 LPKPIHLHHQRLLYPNFPREILRTRHPLLANQGL 186
+P + LHH LL+P FP + +T +PL A+ L
Sbjct: 1 MPPSLSLHHHLLLFP-FPSHV-QTLNPLSASPRL 32
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPG 23
EN+ E+ D+E++ E+ E++ DD +++ ++PG
Sbjct: 447 ENFSDEEGDEEELEEEEEEEEEEEDDDDDDEE-EEEPG 483
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 127 GTEDADDEDVSV---WEDNWEDDVIQDDFNQQLRQQP 26
G E+ ED+ WE+ W+ +V +DD N Q+ P
Sbjct: 283 GHENEQGEDIIAILPWEEWWDFEVKKDDSNPQIALLP 319
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQ 41
G++D DD+D +++ EDD +DD +++
Sbjct: 129 GSDDEDDDDDDGGDEDGEDDDDEDDDDEE 157
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQL 38
EDA++E W+D W+DD + N++L
Sbjct: 388 EDAEEEKARAWDD-WKDDNPRGAGNKKL 414
>05_07_0193 -
28319783-28320211,28320798-28320925,28321543-28321888,
28322386-28322454
Length = 323
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 142 PAENWGTEDADDEDVSVWEDNWEDD 68
P G ++AD D W+DNW D+
Sbjct: 268 PLSTGGKKEADQSDQ--WDDNWGDE 290
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+ DDE V V WE+ + DD + + + G++E
Sbjct: 673 DSEDDEPVMVVAKMWENSKVTDDASSKEKGNDGESE 708
>02_01_0130 - 938530-939990
Length = 486
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
ED D+E+ W + E D I F++ +RQ+P K
Sbjct: 72 EDDDEEEAVEWSKD-ELDAISALFDRPMRQKPPK 104
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 136 ENWGTEDAD-DEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
ENW ED+D +E+ + ED +D DD + L + E E
Sbjct: 205 ENWMEEDSDEEEEEDLDEDEDNEDEEDDDEHLDLEDFDDEEEEEE 249
>05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
G+E D E+ S + EDD+ QDD + + + E +E
Sbjct: 987 GSESGDGEECSREDHEDEDDMDQDDPDAKAESEGEAAENTE 1027
>04_04_1420 + 33441260-33443704
Length = 814
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 118 DADDEDVSVWEDNWEDDVIQDDFN 47
D D+E+VS W + D ++ DFN
Sbjct: 752 DDDEEEVSTWLEELVDARLRGDFN 775
>06_01_0144 + 1089090-1091390
Length = 766
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 71 VFPVVFPNRYIFIISVFCTPI 133
V PVV + Y F+++ C P+
Sbjct: 355 VLPVVLASPYFFVVNYLCFPV 375
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 142 PAENWGTEDADDEDVSVWEDNWEDDVIQDDF 50
P ++G E ADDE +E + D V DF
Sbjct: 93 PLPSYGPEPADDETDKDFETDLVDSVTDKDF 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,993,815
Number of Sequences: 37544
Number of extensions: 121706
Number of successful extensions: 435
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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