Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f23
         (312 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled ...    27   0.12 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   0.87 
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    24   1.5  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   2.0  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    23   2.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   2.6  
AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase p...    23   3.5  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    22   6.1  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    21   8.1  
AY344828-1|AAR02439.1|  153|Anopheles gambiae peritrophin A prot...    21   8.1  
AY344827-1|AAR02438.1|  153|Anopheles gambiae peritrophin A prot...    21   8.1  
AY344826-1|AAR02437.1|  153|Anopheles gambiae peritrophin A prot...    21   8.1  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    21   8.1  
AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...    21   8.1  

>AY553322-1|AAT36323.1|  426|Anopheles gambiae G-protein coupled
           receptor 4 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 309 CCEFTFYVTVVL*LASYLFCYIK*YFLISIIIT 211
           C  F F+ T  L  A  LFC I  YFL  +II+
Sbjct: 228 CVTFGFFATPGLETAYNLFCVIAMYFLPLMIIS 260


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 100 VSVWEDNWEDDVIQDDFNQQLR 35
           +  W++ W+ D +Q D ++  R
Sbjct: 934 IDCWQEEWDADALQQDASRHTR 955


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 124 TEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQP 26
           +E ADD D  V +++ E+D++  DF+     +P
Sbjct: 36  SETADDGDY-VQKNDDEEDIVDSDFSIDENDEP 67


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 62  DDVVFPVVFPNRYIFIISVFCTPIFRGKFFELVILF*QTKVYFLFVSHYTVMI 220
           DD ++ +V+PNR   ++      I R +F E V +     +Y  +   YTV++
Sbjct: 663 DDRMWKIVYPNRLESMLEYSDVQIDRTRFEEAVPVDLNPTIY--YGPDYTVIL 713


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -3

Query: 127  GTEDADDEDVSVWED-NWE-----DDVIQDDFNQQLRQQPGKT 17
            GT+D DDED   +E  ++E      DV   D++Q+    P ++
Sbjct: 1059 GTDDIDDEDTYDYEQPDYELPPEHSDVTTPDYDQRSTPTPQRS 1101


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 272 DLHLIYSATLSDISL 228
           +L L+YSATL D+ L
Sbjct: 235 ELFLLYSATLKDLKL 249


>AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase
           protein.
          Length = 687

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQL 38
           GT +    D+ +   N+ DD +  +FN+ +
Sbjct: 594 GTAEGMKFDLFLMISNFADDTVNQEFNEDI 623


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 281 LCCDLHLIYSATLSDISLFQ*SSQ 210
           +CCD   + +A   DIS+   SSQ
Sbjct: 672 ICCDQDDLVNAYADDISVVTTSSQ 695


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQP 26
           G ED +DE+     D+ E+D  ++D + +L   P
Sbjct: 480 GEEDEEDEEDEYEGDDTEED--EEDEDDELAAGP 511


>AY344828-1|AAR02439.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 79  WEDDVIQDDFNQQLRQQPGKTEGSE 5
           W D   Q D+  Q +  PG T  +E
Sbjct: 62  WNDSQKQCDYPSQAQCAPGVTPNTE 86


>AY344827-1|AAR02438.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 79  WEDDVIQDDFNQQLRQQPGKTEGSE 5
           W D   Q D+  Q +  PG T  +E
Sbjct: 62  WNDSQKQCDYPSQAQCAPGVTPNTE 86


>AY344826-1|AAR02437.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 79  WEDDVIQDDFNQQLRQQPGKTEGSE 5
           W D   Q D+  Q +  PG T  +E
Sbjct: 62  WNDSQKQCDYPSQAQCAPGVTPNTE 86


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 97   IHLHHQRLLYPNFPREIL 150
            + LH + +  P+FPR+ L
Sbjct: 2153 VFLHEELMKLPSFPRKAL 2170


>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 142 EILRTRHPLLANQGLLSVCQPLH 210
           +I  TR P LA    +S C  LH
Sbjct: 428 DIYSTREPQLAFHQRISFCLDLH 450


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 281,608
Number of Sequences: 2352
Number of extensions: 4608
Number of successful extensions: 28
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 20316549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)