Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f23
         (312 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41515-1|AAA91179.1|   70|Homo sapiens DSS1 protein.                   63   1e-10
CR456887-1|CAG33168.1|   70|Homo sapiens SHFM1 protein.                63   1e-10
BC032782-1|AAH32782.1|   70|Homo sapiens split hand/foot malform...    63   1e-10
AC073230-1|AAQ93368.1|   70|Homo sapiens unknown protein.              63   1e-10
U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation in...    30   1.7  
M63582-1|AAA36480.1|  242|Homo sapiens preprothyrotropin-releasi...    27   8.8  
BC110516-1|AAI10517.1|  242|Homo sapiens thyrotropin-releasing h...    27   8.8  
BC110515-1|AAI10516.1|  242|Homo sapiens thyrotropin-releasing h...    27   8.8  
BC074889-1|AAH74889.1|  242|Homo sapiens thyrotropin-releasing h...    27   8.8  
BC074888-1|AAH74888.1|  242|Homo sapiens thyrotropin-releasing h...    27   8.8  
BC069375-1|AAH69375.1|  242|Homo sapiens thyrotropin-releasing h...    27   8.8  
BC006364-1|AAH06364.1|  750|Homo sapiens TBCD protein protein.         27   8.8  

>U41515-1|AAA91179.1|   70|Homo sapiens DSS1 protein.
          Length = 70

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -3

Query: 196 KQKVDLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           KQ VDLG          FPAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAE 59


>CR456887-1|CAG33168.1|   70|Homo sapiens SHFM1 protein.
          Length = 70

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -3

Query: 196 KQKVDLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           KQ VDLG          FPAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAE 59


>BC032782-1|AAH32782.1|   70|Homo sapiens split hand/foot
           malformation (ectrodactyly) type 1 protein.
          Length = 70

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -3

Query: 196 KQKVDLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           KQ VDLG          FPAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAE 59


>AC073230-1|AAQ93368.1|   70|Homo sapiens unknown protein.
          Length = 70

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = -3

Query: 196 KQKVDLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           KQ VDLG          FPAE+W   D +DED  VWEDNW+DD ++DDF+ QLR +
Sbjct: 5   KQPVDLGLLEEDDEFEEFPAEDWAGLD-EDEDAHVWEDNWDDDNVEDDFSNQLRAE 59


>U97670-1|AAC78729.1|  258|Homo sapiens eukaryotic translation
           initiation factor eIF3, p35 subunit protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQP 26
           + WG ED +DEDV   +DNW+DD   D+  ++   +P
Sbjct: 37  DRWGGED-EDEDV---KDNWDDD--DDEKKEEAEVKP 67


>M63582-1|AAA36480.1|  242|Homo sapiens preprothyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC110516-1|AAI10517.1|  242|Homo sapiens thyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC110515-1|AAI10516.1|  242|Homo sapiens thyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC074889-1|AAH74889.1|  242|Homo sapiens thyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC074888-1|AAH74888.1|  242|Homo sapiens thyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC069375-1|AAH69375.1|  242|Homo sapiens thyrotropin-releasing
           hormone protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 127 GTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGK 20
           G   AD +    WE+  E++  ++D   + RQ PGK
Sbjct: 155 GRRLADPKAQRSWEEEEEEEEREEDLMPEKRQHPGK 190


>BC006364-1|AAH06364.1|  750|Homo sapiens TBCD protein protein.
          Length = 750

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  RLPSCLPKPIHLHHQRLLYPNFPR 141
           RLPS  P P   H  +  YP+FPR
Sbjct: 722 RLPSERPAPAGSHRFKSSYPHFPR 745


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,011,262
Number of Sequences: 237096
Number of extensions: 655538
Number of successful extensions: 1800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)