Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17f23
(312 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070697-1|AAL48168.1| 79|Drosophila melanogaster RH34416p pro... 54 3e-08
AE014134-1237|AAF52481.1| 79|Drosophila melanogaster CG13779-P... 54 3e-08
BT009979-1|AAQ22448.1| 171|Drosophila melanogaster RE55548p pro... 28 2.8
AY051748-1|AAK93172.1| 662|Drosophila melanogaster LD27655p pro... 28 2.8
AE014298-937|AAF46191.1| 318|Drosophila melanogaster CG14440-PA... 28 2.8
AE013599-75|AAM68379.1| 662|Drosophila melanogaster CG10417-PB,... 28 2.8
AE013599-74|AAF57333.1| 662|Drosophila melanogaster CG10417-PA,... 28 2.8
AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p pro... 27 3.7
AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein ... 27 3.7
AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB... 27 3.7
AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD... 27 3.7
AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA... 27 3.7
AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC... 27 3.7
BT003781-1|AAO41462.1| 280|Drosophila melanogaster RE01075p pro... 27 4.9
U39553-1|AAB07898.1| 370|Drosophila melanogaster nucleosome ass... 27 6.5
BT001479-1|AAN71234.1| 370|Drosophila melanogaster LD21576p pro... 27 6.5
AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p pro... 27 6.5
AY071275-1|AAL48897.1| 488|Drosophila melanogaster RE30678p pro... 27 6.5
AY061556-1|AAL29104.1| 581|Drosophila melanogaster LP09339p pro... 27 6.5
AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p pro... 27 6.5
AE014296-1803|AAN11922.1| 283|Drosophila melanogaster CG6611-PC... 27 6.5
AE014296-1802|AAF50167.2| 581|Drosophila melanogaster CG6611-PB... 27 6.5
AE014296-1801|AAF50168.2| 581|Drosophila melanogaster CG6611-PA... 27 6.5
AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA ... 27 6.5
AE014134-1150|AAF52427.1| 488|Drosophila melanogaster CG11188-P... 27 6.5
AE013599-3725|AAF47097.1| 370|Drosophila melanogaster CG5330-PA... 27 6.5
BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p pro... 26 8.5
AE014297-4119|ABI31211.1| 4685|Drosophila melanogaster CG3339-PB... 26 8.5
AE014297-4118|AAF56699.2| 4543|Drosophila melanogaster CG3339-PA... 26 8.5
AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA... 26 8.5
>AY070697-1|AAL48168.1| 79|Drosophila melanogaster RH34416p
protein.
Length = 79
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = -3
Query: 184 DLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLR 35
DLG FPAE++ D D+E+++VWEDNW+DD ++DDF+QQL+
Sbjct: 21 DLGLLEEDDEFEEFPAEDFRVGD-DEEELNVWEDNWDDDNVEDDFSQQLK 69
>AE014134-1237|AAF52481.1| 79|Drosophila melanogaster CG13779-PA
protein.
Length = 79
Score = 54.4 bits (125), Expect = 3e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = -3
Query: 184 DLGXXXXXXXXXXFPAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLR 35
DLG FPAE++ D D+E+++VWEDNW+DD ++DDF+QQL+
Sbjct: 21 DLGLLEEDDEFEEFPAEDFRVGD-DEEELNVWEDNWDDDNVEDDFSQQLK 69
>BT009979-1|AAQ22448.1| 171|Drosophila melanogaster RE55548p
protein.
Length = 171
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 106 HHQRLLYPNFPREILRTRHPLLANQGLLSVCQPLH 210
HH RL + N P L R P LS P+H
Sbjct: 15 HHSRLYFLNSPTAPLTARDPFFIKPEYLSYESPMH 49
>AY051748-1|AAK93172.1| 662|Drosophila melanogaster LD27655p
protein.
Length = 662
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEG 11
EN D D + S E+ ED + D+F + ++PGK G
Sbjct: 352 ENDDDGDEDGNEDSDEEETDEDQMANDNFCANMIEEPGKDSG 393
>AE014298-937|AAF46191.1| 318|Drosophila melanogaster CG14440-PA
protein.
Length = 318
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 106 HHQRLLYPNFPREILRTRHPLLANQGLLSVCQPLH 210
HH RL + N P L R P LS P+H
Sbjct: 15 HHSRLYFLNSPTAPLTARDPFFIKPEYLSYESPMH 49
>AE013599-75|AAM68379.1| 662|Drosophila melanogaster CG10417-PB,
isoform B protein.
Length = 662
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEG 11
EN D D + S E+ ED + D+F + ++PGK G
Sbjct: 352 ENDDDGDEDGNEDSDEEETDEDQMANDNFCANMIEEPGKDSG 393
>AE013599-74|AAF57333.1| 662|Drosophila melanogaster CG10417-PA,
isoform A protein.
Length = 662
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEG 11
EN D D + S E+ ED + D+F + ++PGK G
Sbjct: 352 ENDDDGDEDGNEDSDEEETDEDQMANDNFCANMIEEPGKDSG 393
>AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p
protein.
Length = 669
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 518 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 553
>AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein
protein.
Length = 612
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 512 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 547
>AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB,
isoform B protein.
Length = 669
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 518 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 553
>AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD,
isoform D protein.
Length = 612
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 512 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 547
>AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA,
isoform A protein.
Length = 663
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 512 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 547
>AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC,
isoform C protein.
Length = 667
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTE 14
+D+D ED V ED E+DV +Q ++P K++
Sbjct: 516 KDSDSEDEEVSEDEEEEDVSDFASDQSEEERPKKSK 551
>BT003781-1|AAO41462.1| 280|Drosophila melanogaster RE01075p
protein.
Length = 280
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDF---NQQLRQQPGKTE 14
+ N G DDE+ +D+ +DD+I DD ++ R+ K+E
Sbjct: 212 SNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARREARESKSKSE 256
>U39553-1|AAB07898.1| 370|Drosophila melanogaster nucleosome
assembly protein NAP-1 protein.
Length = 370
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDD 53
+D DDED +++N ED+ DD
Sbjct: 325 DDEDDEDEEEYDENEEDEYDDDD 347
>BT001479-1|AAN71234.1| 370|Drosophila melanogaster LD21576p
protein.
Length = 370
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDD 53
+D DDED +++N ED+ DD
Sbjct: 325 DDEDDEDEEEYDENEEDEYDDDD 347
>AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p
protein.
Length = 315
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 124 TEDADDEDVSVWEDNWED--DVIQDDFNQQLRQQPGK 20
TED D+ED WE +++ D + Q+L + GK
Sbjct: 109 TEDDDEEDEDDWEKMFDESGDCLDPKLLQELTESVGK 145
>AY071275-1|AAL48897.1| 488|Drosophila melanogaster RE30678p
protein.
Length = 488
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
ED DDE +E++ EDD +F Q+L G E SE
Sbjct: 89 EDKDDEQEVSYEESDEDDENLTNFKQKL--NAGGAEDSE 125
>AY061556-1|AAL29104.1| 581|Drosophila melanogaster LP09339p
protein.
Length = 581
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ 32
+ N G DDE+ +D+ +DD+I DD + R+
Sbjct: 212 SNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARRE 247
>AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p
protein.
Length = 535
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 124 TEDADDEDVSVWEDNWED--DVIQDDFNQQLRQQPGK 20
TED D+ED WE +++ D + Q+L + GK
Sbjct: 329 TEDDDEEDEDDWEKMFDESGDCLDPKLLQELTESVGK 365
>AE014296-1803|AAN11922.1| 283|Drosophila melanogaster CG6611-PC,
isoform C protein.
Length = 283
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ 32
+ N G DDE+ +D+ +DD+I DD + R+
Sbjct: 212 SNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARRE 247
>AE014296-1802|AAF50167.2| 581|Drosophila melanogaster CG6611-PB,
isoform B protein.
Length = 581
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ 32
+ N G DDE+ +D+ +DD+I DD + R+
Sbjct: 212 SNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARRE 247
>AE014296-1801|AAF50168.2| 581|Drosophila melanogaster CG6611-PA,
isoform A protein.
Length = 581
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQ 32
+ N G DDE+ +D+ +DD+I DD + R+
Sbjct: 212 SNNEGIAGDDDEEADDDDDDDDDDIIGDDIIEARRE 247
>AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA
protein.
Length = 535
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 124 TEDADDEDVSVWEDNWED--DVIQDDFNQQLRQQPGK 20
TED D+ED WE +++ D + Q+L + GK
Sbjct: 329 TEDDDEEDEDDWEKMFDESGDCLDPKLLQELTESVGK 365
>AE014134-1150|AAF52427.1| 488|Drosophila melanogaster CG11188-PA
protein.
Length = 488
Score = 26.6 bits (56), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
ED DDE +E++ EDD +F Q+L G E SE
Sbjct: 89 EDKDDEQEVSYEESDEDDENLTNFKQKL--NAGGAEDSE 125
>AE013599-3725|AAF47097.1| 370|Drosophila melanogaster CG5330-PA
protein.
Length = 370
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 121 EDADDEDVSVWEDNWEDDVIQDD 53
+D DDED +++N ED+ DD
Sbjct: 325 DDEDDEDEEEYDENEEDEYDDDD 347
>BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p
protein.
Length = 1313
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVW-EDNWEDDVIQDDFNQQLRQQPGK 20
+N+ +D D+E++ V ED ED ++ D+ N++ +++ K
Sbjct: 685 KNFDIKDEDEEEIKVLSEDEDEDVMVTDEKNKKKKKKKVK 724
>AE014297-4119|ABI31211.1| 4685|Drosophila melanogaster CG3339-PB,
isoform B protein.
Length = 4685
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 88 EDNWEDDVIQDDFNQQLRQQPGKTEGSEI 2
ED+ +DD D+ Q+LR +P + E+
Sbjct: 1067 EDDEDDDTATVDYEQELRWEPREDRAQEL 1095
>AE014297-4118|AAF56699.2| 4543|Drosophila melanogaster CG3339-PA,
isoform A protein.
Length = 4543
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 88 EDNWEDDVIQDDFNQQLRQQPGKTEGSEI 2
ED+ +DD D+ Q+LR +P + E+
Sbjct: 983 EDDEDDDTATVDYEQELRWEPREDRAQEL 1011
>AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA
protein.
Length = 1313
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = -3
Query: 136 ENWGTEDADDEDVSVW-EDNWEDDVIQDDFNQQLRQQPGK 20
+N+ +D D+E++ V ED ED ++ D+ N++ +++ K
Sbjct: 685 KNFDIKDEDEEEIKVLSEDEDEDVMVTDEKNKKKKKKKVK 724
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,054,407
Number of Sequences: 53049
Number of extensions: 212786
Number of successful extensions: 785
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 610819518
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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