Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f23
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical ...    46   4e-06
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z74032-7|CAD54140.1|  330|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   2.8  
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    27   3.6  
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    27   3.6  
AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical...    27   3.6  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical...    26   4.8  
AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    25   8.4  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    25   8.4  

>AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical
           protein Y119D3B.15 protein.
          Length = 82

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 15/43 (34%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = -3

Query: 142 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKT 17
           P + W    + +++DV+VWEDNW+D+  + +F++QL+++  K+
Sbjct: 35  PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRKS 77


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDF 50
           +D DDED   +ED+ E+DVI D++
Sbjct: 718 DDDDDEDCDDFEDD-EEDVIDDEY 740


>Z74032-7|CAD54140.1|  330|Caenorhabditis elegans Hypothetical
           protein F35B12.9 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 124 TEDADDEDVSVWEDNWEDDVIQD-DFNQQLRQQP 26
           ++ +D+  +S   D++ED+V+Q+ + NQQ R  P
Sbjct: 34  SDSSDESSISSEADSFEDNVVQNKNTNQQRRIDP 67


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 182 VYFLFVSHYTVMIIEIRKYH 241
           VY LFV  Y+++  E+RKYH
Sbjct: 63  VYLLFVIAYSLIPEELRKYH 82


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
           ED DDED    ED  E+D  ++D  ++  +   + E  E
Sbjct: 576 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 614


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSE 5
           ED DDED    ED  E+D  ++D  ++  +   + E  E
Sbjct: 586 EDDDDEDEEEDEDEEEEDEDEEDEEEEENESEEEEEDDE 624


>Z81135-3|CAB03456.1|  251|Caenorhabditis elegans Hypothetical
           protein W01G7.4 protein.
          Length = 251

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 115 ADDEDVSVWEDNWEDD 68
           ADDED S  EDNW +D
Sbjct: 171 ADDEDDSNDEDNWRND 186


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQPGKTEGSEI 2
           ED DD D    ED+ E++   DD    L+ + G+T  SE+
Sbjct: 389 EDMDDSDNEEVEDDSEEEEPMDD----LKSEAGETTASEM 424


>AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical
           protein Y52B11A.10 protein.
          Length = 819

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 142 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLR-QQPGKTEGSE 5
           P E+   ED  DE +S  EDN +D+ I +  + ++    P K+E +E
Sbjct: 243 PVESEDDEDMVDEMMSDEEDNVDDEKIVEISDSEIETSAPKKSEETE 289


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 118  DADDEDVSVWEDNWEDDVIQDDFNQQL 38
            D  DED+  +EDNW   +I + FN +L
Sbjct: 1079 DEIDEDIKQFEDNW---LIYEMFNNEL 1102


>AL034488-12|CAD31697.1|  450|Caenorhabditis elegans Hypothetical
           protein Y54G11A.14 protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           +D ++ED    ED  ED+   D+ N++++++
Sbjct: 59  DDEEEEDEDEEEDEAEDEAEDDEENEEVKEE 89


>AF067947-7|AAK68397.2|  295|Caenorhabditis elegans Hypothetical
           protein T10B5.3 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 139 AENWGTEDADDEDVSVWEDNWEDDVIQDD 53
           +E++ T  +DD+  S  +D WED+ +++D
Sbjct: 226 SEDFDTIGSDDDGESSEDDWWEDNELKED 254


>Z81554-5|CAB04510.2|  401|Caenorhabditis elegans Hypothetical
           protein F57G4.8 protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 118 DADDEDVSVWEDNWED 71
           D DDEDV  W +N +D
Sbjct: 140 DNDDEDVQYWRENVDD 155


>Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical
           protein ZC443.4 protein.
          Length = 389

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 121 EDADDEDVSVWEDNWEDDV-IQDDFNQQLRQQ 29
           ED DD+D    E+N EDD  ++DD + +   Q
Sbjct: 277 EDDDDDDDEEEEENVEDDENLEDDEDDRTEDQ 308


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 130 WGTEDADDEDVSVWEDNWEDDVIQDDFN 47
           W T   DD+D   W D  +   + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 130 WGTEDADDEDVSVWEDNWEDDVIQDDFN 47
           W T   DD+D   W D  +   + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 130 WGTEDADDEDVSVWEDNWEDDVIQDDFN 47
           W T   DD+D   W D  +   + +DF+
Sbjct: 732 WSTLQRDDDDEEEWNDEEDLSDVGEDFD 759


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 112 DDEDVSVWEDNWEDDVIQDDFNQQLRQQ 29
           DD+D   + D +ED+V + D+N++  ++
Sbjct: 190 DDDDDGEYNDVFEDEVKKIDYNKRFEEK 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,365,775
Number of Sequences: 27780
Number of extensions: 115721
Number of successful extensions: 492
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)