Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17f15
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...   191   1e-49
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    33   0.064
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    28   1.4  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    28   1.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   3.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   5.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   5.5  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 557

 Score =  191 bits (465), Expect = 1e-49
 Identities = 117/272 (43%), Positives = 160/272 (58%), Gaps = 15/272 (5%)
 Frame = -3

Query: 812  LAAARTVADYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEK 633
            L AAR VAD+L T HHE  F  ++    L +VIYHLE+YD+TTIRAS PMYLLS+ IK +
Sbjct: 288  LLAARKVADFLHTFHHEHTFTIDEGLDALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQ 347

Query: 632  TDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLE 453
                +V SGEG+DE+  GY+YF +APS +  H E VR + +++L D LRA+++T A+ LE
Sbjct: 348  -GVKMVLSGEGSDEIFGGYLYFGNAPSREAFHSECVRRVKNLHLSDCLRANKSTMAWGLE 406

Query: 452  LRVPFLDIQFTHHYLSIPPKLRQPQNG-VEKHLLRSSF------AKSGLLPDCVLWRHKE 294
             RVPFLD  F    L+I P+ +   NG  EK++LR +F      +    LP  +LWR KE
Sbjct: 407  ARVPFLDKDFLEVALNIDPEEKMYINGRKEKYILRKAFDTTHDSSLQPYLPQDILWRQKE 466

Query: 293  AFSDGVSSVKKSLFSVIKEITTERLQEDDIQYPGLQ-----PKTNESKYYRYVFEKSFPG 129
             FSDGV     S    +K+     + +D+   P  +     P T E+ +YR +F++ FP 
Sbjct: 467  QFSDGVG---YSWIDALKDTAELCISDDEFALPRREWGDDIPTTKEAFWYRKLFDEIFPR 523

Query: 128  QHNFTPYYWMPK--WVQVSDPSARF-IKHYAA 42
            Q   T   W+PK  W    DPS R+   H AA
Sbjct: 524  QCADTVMRWVPKAEWGCPEDPSGRYQAGHVAA 555


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 32.7 bits (71), Expect = 0.064
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
 Frame = -3

Query: 707 LESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKD--AHK 534
           L++ D   ++  LP Y     IK K    V+ SG GADE   GY+    A   K     +
Sbjct: 388 LQNVDDIKLKHQLPSYT----IKAK----VLISGLGADEQLGGYMRHLRAFERKGMAGLE 439

Query: 533 ESVRLLSDIYLYDGL-RADRTTSAFSLELRVPFLD--IQFTHHYLSIPPKLRQPQNGVEK 363
           E ++L  D   +  L R DR  S    E+R PFLD  +      +    K+R    G +K
Sbjct: 440 EELQLDIDRIPHRNLGRDDRVMSNQGKEVRYPFLDERLMALFSKMKTTDKMRLDLVGGDK 499

Query: 362 HLLR 351
            +LR
Sbjct: 500 LILR 503


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -3

Query: 731 DLDNVIYHLESYDITTI----RASLPMYLLSKYIK-EKTDTTVVFSG--EGADELAQGYI 573
           +L N+++ LE+YD+T +    R+ L ++ L+ Y + E TD    F    EG D +     
Sbjct: 80  NLTNMVFDLENYDLTDLDNFDRSKLLVFFLATYGEGEPTDNAEAFLQLLEGDDTVFSSGK 139

Query: 572 YFRDAPSE 549
              D P E
Sbjct: 140 GIEDTPFE 147


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 262 NRCSRS*KRSQLKDYKKTIY-NIQDCSRKRMNPNITATYLRNHFQDNIILLRTIGCQNGF 86
           N  S   +   L+  KK  +   ++C +K   P++   +LR H  +   +    GC   F
Sbjct: 5   NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAF 64


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 788 DYLGTEHHEVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDT 624
           DY+ T    +   EN +R D+D++I  L S+DI    A  P   L   +    D+
Sbjct: 630 DYISTLIDTLVSLENPMR-DIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDS 683


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = -3

Query: 284 DGVSSVKKSLFSVIKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPGQHNFTPY 108
           D +S   K L   I      R+ E  +  P L+PK   +   +  F +    +H F  +
Sbjct: 774 DSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQVKLAFAQKKYVEHAFIDF 832


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 241 FMTENNDFLTEDTPSLNA---SLCRHSTQSG 324
           + T+N+ FL+ DTP L A   +L  + T+SG
Sbjct: 455 YTTQNSYFLSRDTPKLRALVDALRHYDTKSG 485


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -3

Query: 671 LPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDG 492
           L + L++  +KEKTD   + +   +  L   Y +F +       H   +  LS++YL   
Sbjct: 444 LEISLMNDTLKEKTDIFTMLTNSLSSFLVTDYDFFLEL-----KHLIDISSLSNLYLDSS 498

Query: 491 LRADRTTSAFSL 456
           L A R    +S+
Sbjct: 499 LNAMRLLYGWSV 510


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 161 YRYVFEKSFPGQHNFTPYYWMPK 93
           YR  FE+ F G  N   Y W PK
Sbjct: 349 YRPDFEQCFTGDMNGNIYMWSPK 371


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -1

Query: 556  RLKRTHIKRAYVCFLIFISMMDCEQIERRVPLV*NYEYRF*ISNSLITIFQYLLNYDNPK 377
            R KRT +     CF   +S+   + I R    + N E+   + N ++ +F  LL+  + +
Sbjct: 3728 RKKRTELPELSYCFKHLVSLQSLKSISRTQVDLTNDEF-LNLMNFVLNLFDSLLS--SIE 3784

Query: 376  TALRNI 359
            TA +N+
Sbjct: 3785 TATKNM 3790


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,945
Number of Sequences: 5004
Number of extensions: 70017
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)